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Nickel in PDB 3kbn: Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form
Enzymatic activity of Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form
All present enzymatic activity of Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form:
5.3.1.5;
5.3.1.5;
Protein crystallography data
The structure of Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form, PDB code: 3kbn
was solved by
A.Y.Kovalevsky,
L.Hanson,
P.Langan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 20.00 / 1.53 |
| Space group | I 2 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 94.007, 99.669, 102.862, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 13.8 / 18.1 |
Nickel Binding Sites:
The binding sites of Nickel atom in the Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form
(pdb code 3kbn). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 3 binding sites of Nickel where determined in the Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form, PDB code: 3kbn:
Jump to Nickel binding site number: 1; 2; 3;
In total 3 binding sites of Nickel where determined in the Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form, PDB code: 3kbn:
Jump to Nickel binding site number: 1; 2; 3;
Nickel binding site 1 out of 3 in 3kbn
Go back to
Nickel Binding Sites List in 3kbn
Nickel binding site 1 out
of 3 in the Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form within 5.0Å range:
|
Nickel binding site 2 out of 3 in 3kbn
Go back to
Nickel Binding Sites List in 3kbn
Nickel binding site 2 out
of 3 in the Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form within 5.0Å range:
|
Nickel binding site 3 out of 3 in 3kbn
Go back to
Nickel Binding Sites List in 3kbn
Nickel binding site 3 out
of 3 in the Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 3 of Room Temperature Structure of D-Xylose Isomerase in Complex with 2NI(2+) Co-Factors and D12-D-Glucose in the Linear Form within 5.0Å range:
|
Reference:
A.Y.Kovalevsky,
L.Hanson,
S.Z.Fisher,
M.Mustyakimov,
S.A.Mason,
V.T.Forsyth,
M.P.Blakeley,
D.A.Keen,
T.Wagner,
H.L.Carrell,
A.K.Katz,
J.P.Glusker,
P.Langan.
Metal Ion Roles and the Movement of Hydrogen During Reaction Catalyzed By D-Xylose Isomerase: A Joint X-Ray and Neutron Diffraction Study. Structure V. 18 688 2010.
ISSN: ISSN 0969-2126
PubMed: 20541506
DOI: 10.1016/J.STR.2010.03.011
Page generated: Wed Oct 9 17:27:04 2024
ISSN: ISSN 0969-2126
PubMed: 20541506
DOI: 10.1016/J.STR.2010.03.011
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