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Nickel in PDB 3kbw: Room Temperature X-Ray Mixed-Metal Structure of D-Xylose Isomerase in Complex with Ni(2+) and Mg(2+) Co-Factors
Enzymatic activity of Room Temperature X-Ray Mixed-Metal Structure of D-Xylose Isomerase in Complex with Ni(2+) and Mg(2+) Co-Factors
All present enzymatic activity of Room Temperature X-Ray Mixed-Metal Structure of D-Xylose Isomerase in Complex with Ni(2+) and Mg(2+) Co-Factors:
5.3.1.5;
5.3.1.5;
Protein crystallography data
The structure of Room Temperature X-Ray Mixed-Metal Structure of D-Xylose Isomerase in Complex with Ni(2+) and Mg(2+) Co-Factors, PDB code: 3kbw
was solved by
A.Y.Kovalevsky,
L.Hanson,
P.Langan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 10.00 / 1.60 |
| Space group | I 2 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 93.972, 99.701, 102.855, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 11.9 / 16.7 |
Other elements in 3kbw:
The structure of Room Temperature X-Ray Mixed-Metal Structure of D-Xylose Isomerase in Complex with Ni(2+) and Mg(2+) Co-Factors also contains other interesting chemical elements:
| Magnesium | (Mg) | 1 atom |
Nickel Binding Sites:
The binding sites of Nickel atom in the Room Temperature X-Ray Mixed-Metal Structure of D-Xylose Isomerase in Complex with Ni(2+) and Mg(2+) Co-Factors
(pdb code 3kbw). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Room Temperature X-Ray Mixed-Metal Structure of D-Xylose Isomerase in Complex with Ni(2+) and Mg(2+) Co-Factors, PDB code: 3kbw:
In total only one binding site of Nickel was determined in the Room Temperature X-Ray Mixed-Metal Structure of D-Xylose Isomerase in Complex with Ni(2+) and Mg(2+) Co-Factors, PDB code: 3kbw:
Nickel binding site 1 out of 1 in 3kbw
Go back to
Nickel Binding Sites List in 3kbw
Nickel binding site 1 out
of 1 in the Room Temperature X-Ray Mixed-Metal Structure of D-Xylose Isomerase in Complex with Ni(2+) and Mg(2+) Co-Factors
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Room Temperature X-Ray Mixed-Metal Structure of D-Xylose Isomerase in Complex with Ni(2+) and Mg(2+) Co-Factors within 5.0Å range:
|
Reference:
A.Y.Kovalevsky,
L.Hanson,
S.Z.Fisher,
M.Mustyakimov,
S.A.Mason,
V.T.Forsyth,
M.P.Blakeley,
D.A.Keen,
T.Wagner,
H.L.Carrell,
A.K.Katz,
J.P.Glusker,
P.Langan.
Metal Ion Roles and the Movement of Hydrogen During Reaction Catalyzed By D-Xylose Isomerase: A Joint X-Ray and Neutron Diffraction Study. Structure V. 18 688 2010.
ISSN: ISSN 0969-2126
PubMed: 20541506
DOI: 10.1016/J.STR.2010.03.011
Page generated: Wed Dec 16 01:25:05 2020
ISSN: ISSN 0969-2126
PubMed: 20541506
DOI: 10.1016/J.STR.2010.03.011
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