Chemical elements
  Nickel
    History
    Occurrence
    Isotopes
    Energy
    Production
    Preparation
    Application
    Catalyst
    Physical Properties
    Compounds
    PDB 1a5n-1g2a
    PDB 1g3v-1mn0
    PDB 1mro-1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
    PDB 2jk8-2v4b
    PDB 2vbq-3c2q
    PDB 3c6c-3h85
    PDB 3hdp-3kvb
      3hdp
      3hg9
      3hpx
      3ht1
      3hth
      3htj
      3htn
      3hwp
      3hxt
      3hy3
      3hy4
      3hy6
      3i01
      3i04
      3i0o
      3i0q
      3i2b
      3i39
      3iar
      3ib3
      3idq
      3iga
      3iht
      3ii2
      3ii3
      3iii
      3ile
      3imp
      3inc
      3iu8
      3iu9
      3iv8
      3iwf
      3k0h
      3k0k
      3k15
      3k16
      3k2i
      3k2o
      3k4z
      3k6l
      3k9u
      3kbn
      3kbr
      3kbv
      3kbw
      3kco
      3kkc
      3kv4
      3kvb
    PDB 3l1m-3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in the structure of Structure of PHF8 in Complex With Histone H3 (pdb 3kv4)






The binding sites of Nickel atom in the structure of Structure of PHF8 in Complex With Histone H3 (pdb code 3kv4). This binding sites where shown with 5.0 Angstroms radius around Nickel atom.
The 3kv4 structure was solved by J.R.HORTON, A.K.UPADHYAY, H.H.QI, X.ZHANG, Y.SHI, X.CHENG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)34.7-2.2
Space groupP43212
a (A)73.500
b (A)73.500
c (A)210.800
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)21.7
Rfree (%)25.5


Nickel Binding Sites:

Nickel binding site 1 out of 1 in 3kv4


Nickel binding site 1 out of 1 in 3kv4
Click to enlarge
stereopicture of Nickel binding site 1 out of 1 in 3kv4
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Nickel in the PDB 3kv4. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ser214, A: Trp215, A: Val216, A: Glu217, A: Asn333, A: Phe334, A: Leu335, A: Phe361, A: Hoh526,

conact list:


AtomAtomDistance (A)
NiCB A:Ser2144.03
NiOG A:Ser2143.03
NiC A:Ser2144.10
NiCA A:Ser2144.10
NiN A:Trp2153.50
NiCB A:Trp2154.20
NiC A:Trp2154.28
NiCA A:Trp2154.19
NiN A:Val2163.37
NiCB A:Val2163.74
NiCG2 A:Val2163.86
NiCA A:Val2164.17
NiN A:Glu2174.84
NiO A:Asn3334.82
NiN A:Phe3344.92
NiCB A:Phe3343.98
NiC A:Phe3343.91
NiCA A:Phe3343.68
NiO A:Leu3353.78
NiN A:Leu3353.12
NiCB A:Leu3354.02
NiCD1 A:Leu3354.89
NiC A:Leu3354.37
NiCG A:Leu3354.46
NiCA A:Leu3354.04
NiCZ A:Phe3614.32
NiCE1 A:Phe3614.55
NiO A:Hoh5263.20

interactive model:




© Copyright 2008-2012 by atomistry.com