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Nickel in PDB 3lho: Crystal Structure of Putative Hydrolase (YP_751971.1) From Shewanella Frigidimarina Ncimb 400 at 1.80 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Hydrolase (YP_751971.1) From Shewanella Frigidimarina Ncimb 400 at 1.80 A Resolution, PDB code: 3lho was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.56 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.098, 75.035, 91.112, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 20.7

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Putative Hydrolase (YP_751971.1) From Shewanella Frigidimarina Ncimb 400 at 1.80 A Resolution (pdb code 3lho). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Putative Hydrolase (YP_751971.1) From Shewanella Frigidimarina Ncimb 400 at 1.80 A Resolution, PDB code: 3lho:

Nickel binding site 1 out of 1 in 3lho

Go back to Nickel Binding Sites List in 3lho
Nickel binding site 1 out of 1 in the Crystal Structure of Putative Hydrolase (YP_751971.1) From Shewanella Frigidimarina Ncimb 400 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Putative Hydrolase (YP_751971.1) From Shewanella Frigidimarina Ncimb 400 at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni267

b:23.8
occ:1.00
O A:HOH310 2.0 21.1 1.0
NE2 A:HIS164 2.1 20.1 1.0
NE2 A:HIS40 2.1 23.1 1.0
OE1 A:GLU234 2.2 20.1 1.0
O A:HOH306 2.3 21.2 1.0
O A:HOH327 2.4 27.2 1.0
CE1 A:HIS40 3.0 21.7 1.0
CE1 A:HIS164 3.0 16.1 1.0
CD A:GLU234 3.1 23.2 1.0
CD2 A:HIS164 3.1 17.4 1.0
CD2 A:HIS40 3.2 18.4 1.0
OE2 A:GLU234 3.3 19.5 1.0
OG1 A:THR166 3.7 16.7 1.0
NE2 A:GLN209 3.8 24.9 1.0
ND1 A:HIS164 4.2 18.7 1.0
ND1 A:HIS40 4.2 16.9 1.0
CG A:HIS164 4.3 19.4 1.0
CG A:HIS40 4.3 20.4 1.0
CG A:GLU234 4.5 17.1 1.0
CB A:ALA42 4.8 17.6 1.0
CB A:THR166 4.9 14.2 1.0
CD A:GLN209 4.9 32.1 1.0
CB A:GLU234 5.0 17.2 1.0
CD2 A:PHE250 5.0 29.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
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