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Nickel in PDB, part 14 (files: 521-560), PDB 3l1m-3n6n

Experimental structures of coordination spheres of Nickel (Ni) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Nickel atoms. PDB files: 521-560 (PDB 3l1m-3n6n).
  1. 3l1m (Ni: 1) - Crystal Structure of A Ni-Directed Dimer of Cytochrome CB562 with A Quinolate-Histidine Hybrid Coordination Motif
    Other atoms: Fe (1);
  2. 3l6p (Ni: 3) - Crystal Structure of Dengue Virus 1 NS2B/NS3 Protease
    Other atoms: Cd (1);
  3. 3l6t (Ni: 2) - Crystal Structure of An N-Terminal Mutant of the Plasmid PCU1 Trai Relaxase Domain
    Other atoms: Mg (1); Cl (3); Na (1);
  4. 3la4 (Ni: 2) - Crystal Structure of the First Plant Urease From Jack Bean (Canavalia Ensiformis)
  5. 3lag (Ni: 2) - The Crystal Structure of A Functionally Unknown Protein RPA4178 From Rhodopseudomonas Palustris CGA009
    Other atoms: Ca (1);
  6. 3le0 (Ni: 1) - Lectin Domain of Lectinolysin Complexed with Glycerol
    Other atoms: Ca (1);
  7. 3leg (Ni: 1) - Lectin Domain of Lectinolysin Complexed with Lewis Y Antigen
    Other atoms: Ca (1);
  8. 3lei (Ni: 1) - Lectin Domain of Lectinolysin Complexed with Fucose
    Other atoms: Ca (1);
  9. 3lek (Ni: 1) - Lectin Domain of Lectinolysin Complexed with Lewis B Antigen
    Other atoms: Ca (1);
  10. 3leo (Ni: 2) - Structure of Human Leukotriene C4 Synthase Mutant R31Q in Complex with Glutathione
  11. 3lgh (Ni: 4) - Crystal Structure of Nikr From Helicobacter Pylori with Variable Ni Site Coordination
    Other atoms: Mg (1);
  12. 3lho (Ni: 1) - Crystal Structure of Putative Hydrolase (YP_751971.1) From Shewanella Frigidimarina Ncimb 400 at 1.80 A Resolution
  13. 3lmw (Ni: 1) - Crystal Structure of Iota-Carrageenase Family GH82 From A. Fortis in Absence of Chloride Ions
    Other atoms: Ca (1);
  14. 3lop (Ni: 2) - Crystal Structure of Substrate-Binding Periplasmic Protein (Pbp) From Ralstonia Solanacearum
    Other atoms: Mg (1); Mn (1);
  15. 3lxy (Ni: 1) - Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis CO92
  16. 3m1v (Ni: 2) - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
    Other atoms: Mg (9); Zn (1);
  17. 3m2r (Ni: 2) - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
    Other atoms: Mg (9); Zn (1);
  18. 3m2u (Ni: 2) - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
    Other atoms: Mg (11); Zn (1);
  19. 3m2v (Ni: 2) - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
    Other atoms: Mg (5); Zn (1);
  20. 3m30 (Ni: 2) - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
    Other atoms: Mg (9); Zn (1);
  21. 3m32 (Ni: 2) - Structural Insight Into Methyl-Coenzyme M Reductase Chemistry Using Coenzyme B Analogues
    Other atoms: Mg (9); Zn (1);
  22. 3mgq (Ni: 47) - Binding of Nickel Ions to the Nucleosome Core Particle
    Other atoms: Cl (4);
  23. 3mib (Ni: 1) - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) with Bound Nitrite
    Other atoms: Cu (2);
  24. 3mic (Ni: 1) - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) with Bound Azide Obtained By Co-Crystallization
    Other atoms: Cu (2); Na (2);
  25. 3mid (Ni: 1) - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) with Bound Azide Obtained By Soaking (100MM NAN3)
    Other atoms: Cu (2);
  26. 3mie (Ni: 1) - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) with Bound Azide Obtained By Soaking (50MM NAN3)
    Other atoms: Cu (2); Na (1);
  27. 3mif (Ni: 1) - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) with Bound Carbon Monooxide (Co)
    Other atoms: Cu (2);
  28. 3mig (Ni: 1) - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) with Bound Nitrite, Obtained in the Presence of Substrate
    Other atoms: Cu (2);
  29. 3mih (Ni: 1) - Oxidized (CU2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) with Bound Azide, Obtained in the Presence of Substrate
    Other atoms: I (1); Cu (2); Na (4);
  30. 3mlj (Ni: 1) - Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) with Bound Carbon Monooxide (Co)
    Other atoms: Cu (2);
  31. 3mlk (Ni: 1) - Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) with Bound Nitrite
    Other atoms: Cu (1);
  32. 3mll (Ni: 1) - Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) with Bound Azide
    Other atoms: Cu (1);
  33. 3mmu (Ni: 36) - Crystal Structure of Endoglucanase CEL5A From the Hyperthermophilic Thermotoga Maritima
    Other atoms: Cd (20);
  34. 3ms5 (Ni: 1) - Crystal Structure of Human Gamma-Butyrobetaine,2-Oxoglutarate Dioxygenase 1 (BBOX1)
    Other atoms: Zn (1);
  35. 3myr (Ni: 4) - Crystal Structure of [Nife] Hydrogenase From Allochromatium Vinosum in Its Ni-A State
    Other atoms: Mg (4); Fe (52); Cl (4);
  36. 3n0q (Ni: 2) - Crystal Structure of A Putative Aromatic-Ring Hydroxylating Dioxygenase (TM1040_3219) From Silicibacter Sp. TM1040 at 1.80 A Resolution
    Other atoms: Fe (2); Cl (1);
  37. 3n0w (Ni: 1) - Crystal Structure of A Branched Chain Amino Acid Abc Transporter Periplasmic Ligand-Binding Protein (BXE_C0949) From Burkholderia Xenovorans LB400 at 1.88 A Resolution
  38. 3n6l (Ni: 1) - The Crystal Strucutre of Rna-Dependent Rna Polymerase of EV71 Virus
  39. 3n6m (Ni: 1) - Crystal Structure of EV71 Rdrp in Complex with Gtp
  40. 3n6n (Ni: 1) - Crystal Structure of EV71 Rdrp in Complex with Br-Utp
    Other atoms: Br (1);
Page generated: Mon Jan 25 15:55:44 2021

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