Atomistry » Nickel » PDB 3a1f-3ds9 » 3lxy
Atomistry »
  Nickel »
    PDB 3a1f-3ds9 »
      3lxy »

Nickel in PDB 3lxy: Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis CO92

Enzymatic activity of Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis CO92

All present enzymatic activity of Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis CO92:
1.1.1.262;

Protein crystallography data

The structure of Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis CO92, PDB code: 3lxy was solved by B.Nocek, N.Maltseva, K.Kwon, W.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.52 / 1.70
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 75.939, 88.105, 100.511, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 24.8

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis CO92 (pdb code 3lxy). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis CO92, PDB code: 3lxy:

Nickel binding site 1 out of 1 in 3lxy

Go back to Nickel Binding Sites List in 3lxy
Nickel binding site 1 out of 1 in the Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis CO92


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis CO92 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni501

b:24.2
occ:1.00
O A:HOH467 2.0 20.4 1.0
NE2 A:HIS167 2.1 23.0 1.0
NE2 A:HIS267 2.2 25.2 1.0
O A:HOH345 2.2 24.0 1.0
O A:HOH463 2.3 27.7 1.0
CE1 A:HIS167 2.8 29.6 1.0
CD2 A:HIS267 3.1 21.1 1.0
CE1 A:HIS267 3.2 24.2 1.0
CD2 A:HIS167 3.2 29.7 1.0
ND1 A:HIS167 4.1 30.6 1.0
CG A:HIS167 4.3 26.5 1.0
ND1 A:HIS267 4.3 21.5 1.0
CG A:HIS267 4.3 18.8 1.0
CD1 A:LEU271 4.6 20.2 1.0

Reference:

B.Nocek, N.Maltseva, K.Kwon, M.Makowska-Grzyska, W.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis CO92 To Be Published.
Page generated: Fri Sep 25 08:27:15 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy