Chemical elements
  Nickel
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    Compounds
    PDB 1a5n-1g2a
    PDB 1g3v-1mn0
    PDB 1mro-1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
    PDB 2jk8-2v4b
    PDB 2vbq-3c2q
    PDB 3c6c-3h85
    PDB 3hdp-3kvb
    PDB 3l1m-3o00
      3l1m
      3l6p
      3l6t
      3la4
      3lag
      3le0
      3leg
      3lei
      3lek
      3leo
      3lgh
      3lho
      3lmw
      3lop
      3lxy
      3m1v
      3m2r
      3m2u
      3m2v
      3m30
      3m32
      3mgq
      3mib
      3mic
      3mid
      3mie
      3mif
      3mig
      3mih
      3mlj
      3mlk
      3mll
      3mmu
      3ms5
      3myr
      3n0q
      3n0w
      3nbk
      3ne7
      3nf3
      3njy
      3nmj
      3no4
      3nv1
      3nv2
      3nv3
      3nv4
      3ny0
      3nzz
      3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in the structure of Binding of Nickel Ions to the Nucleosome Core Particle (pdb 3mgq)






The binding sites of Nickel atom in the structure of Binding of Nickel Ions to the Nucleosome Core Particle (pdb code 3mgq). This binding sites where shown with 5.0 Angstroms radius around Nickel atom.
The 3mgq structure was solved by K.MOHIDEEN, R.MUHAMMAD, C.A.DAVEY, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)51.0-2.6
Space groupP212121
a (A)106.129
b (A)109.643
c (A)183.109
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)23.2
Rfree (%)27.6


Nickel Binding Sites:

Nickel binding site 1 out of 47 in 3mgq


Nickel binding site 1 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 1 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Glu73, E: Gln76, E: Asp77, F: Leu22,

conact list:


AtomAtomDistance (A)
NiO E:Glu734.56
NiCG E:Glu734.70
NiOE1 E:Gln764.27
NiN E:Asp774.62
NiCB E:Asp774.45
NiOD2 E:Asp773.43
NiOD1 E:Asp772.04
NiCG E:Asp773.08
NiCA E:Asp774.76
NiO F:Leu224.06

interactive model:


Nickel binding site 2 out of 47 in 3mgq


Nickel binding site 2 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 2 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg-28, J: Da26, J: Dg27, J: Dc28,

conact list:


AtomAtomDistance (A)
NiC6 I:Dg-284.71
NiO6 I:Dg-283.57
NiC8 J:Da264.47
NiN7 J:Da264.75
NiN9 J:Dg274.18
NiC8 J:Dg273.13
NiC6 J:Dg272.98
NiN1 J:Dg274.36
NiC5 J:Dg272.72
NiN7 J:Dg271.97
NiC4 J:Dg273.99
NiO6 J:Dg272.62
NiN4 J:Dc284.73

interactive model:


Nickel binding site 3 out of 47 in 3mgq


Nickel binding site 3 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 3 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da60, I: Dg61, I: Dg62,

conact list:


AtomAtomDistance (A)
NiN9 I:Da604.72
NiC8 I:Da604.02
NiC5 I:Da604.74
NiN7 I:Da604.03
NiN9 I:Dg614.50
NiC8 I:Dg613.29
NiC6 I:Dg613.80
NiC5 I:Dg613.34
NiN7 I:Dg612.32
NiC4 I:Dg614.53
NiO6 I:Dg613.49
NiO6 I:Dg624.53

interactive model:


Nickel binding site 4 out of 47 in 3mgq


Nickel binding site 4 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 4 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt-4, I: Dg-3, I: Dg-2,

conact list:


AtomAtomDistance (A)
NiC6 I:Dt-44.67
NiC5 I:Dt-44.83
NiC7 I:Dt-44.89
NiC2' I:Dt-44.68
NiN9 I:Dg-34.48
NiC8 I:Dg-33.30
NiC6 I:Dg-33.68
NiC5 I:Dg-33.27
NiN7 I:Dg-32.29
NiC4 I:Dg-34.46
NiO6 I:Dg-33.39
NiO6 I:Dg-24.43

interactive model:


Nickel binding site 5 out of 47 in 3mgq


Nickel binding site 5 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 5 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dt47, J: Dg48, J: Dg49,

conact list:


AtomAtomDistance (A)
NiC2' J:Dt474.55
NiN9 J:Dg484.49
NiC8 J:Dg483.32
NiC6 J:Dg483.88
NiC5 J:Dg483.41
NiN7 J:Dg482.42
NiC4 J:Dg484.54
NiOP2 J:Dg484.49
NiO6 J:Dg483.62
NiO6 J:Dg494.61

interactive model:


Nickel binding site 6 out of 47 in 3mgq


Nickel binding site 6 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 6 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dt-4, J: Dg-3, J: Dg-2,

conact list:


AtomAtomDistance (A)
NiC3' J:Dt-44.75
NiC1' J:Dt-44.95
NiO3' J:Dt-44.61
NiC2' J:Dt-43.96
NiN9 J:Dg-34.42
NiC8 J:Dg-33.16
NiC6 J:Dg-34.03
NiC5 J:Dg-33.49
NiN7 J:Dg-32.35
NiC4 J:Dg-34.59
NiOP2 J:Dg-34.28
NiO6 J:Dg-33.76
NiO6 J:Dg-24.48

interactive model:


Nickel binding site 7 out of 47 in 3mgq


Nickel binding site 7 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 7 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Da60, J: Dg61, J: Dg62,

conact list:


AtomAtomDistance (A)
NiN9 J:Da604.63
NiC8 J:Da603.86
NiC5 J:Da604.75
NiN7 J:Da603.93
NiC2' J:Da604.94
NiN9 J:Dg614.45
NiC8 J:Dg613.23
NiC6 J:Dg613.74
NiC5 J:Dg613.28
NiN7 J:Dg612.25
NiC4 J:Dg614.47
NiO6 J:Dg613.49
NiC6 J:Dg624.93
NiN7 J:Dg624.98
NiO6 J:Dg623.96

interactive model:


Nickel binding site 8 out of 47 in 3mgq


Nickel binding site 8 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 8 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Glu102, D: His106,

conact list:


AtomAtomDistance (A)
NiOE1 D:Glu1024.08
NiOE2 D:Glu1022.64
NiCD D:Glu1023.66
NiCG D:Glu1024.91
NiNE2 D:His1062.48
NiND1 D:His1063.91
NiCD2 D:His1063.74
NiCE1 D:His1062.68
NiCG D:His1064.45

interactive model:


Nickel binding site 9 out of 47 in 3mgq


Nickel binding site 9 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 9 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt47, I: Dg48, I: Dg49,

conact list:


AtomAtomDistance (A)
NiC3' I:Dt474.85
NiC6 I:Dt474.99
NiC1' I:Dt474.77
NiO3' I:Dt474.94
NiC2' I:Dt473.83
NiN9 I:Dg484.16
NiC8 I:Dg483.10
NiC6 I:Dg482.96
NiN1 I:Dg484.36
NiC5 I:Dg482.70
NiN7 I:Dg481.92
NiC4 I:Dg483.98
NiOP2 I:Dg484.46
NiO6 I:Dg482.59
NiO6 I:Dg494.52

interactive model:


Nickel binding site 10 out of 47 in 3mgq


Nickel binding site 10 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 10 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: Tyr88, H: His79,

conact list:


AtomAtomDistance (A)
NiOH F:Tyr884.79
NiNE2 H:His792.50
NiND1 H:His794.54
NiCD2 H:His793.07
NiCE1 H:His793.63
NiCG H:His794.30

interactive model:


Nickel binding site 11 out of 47 in 3mgq


Nickel binding site 11 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 11 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da26, I: Dg27, J: Dg-28,

conact list:


AtomAtomDistance (A)
NiN9 I:Da264.48
NiC8 I:Da263.54
NiC5 I:Da264.52
NiN7 I:Da263.55
NiC2' I:Da264.89
NiN9 I:Dg274.36
NiC8 I:Dg273.27
NiC6 I:Dg273.33
NiN1 I:Dg274.71
NiC5 I:Dg273.01
NiN7 I:Dg272.17
NiC4 I:Dg274.25
NiO6 I:Dg272.99
NiO6 J:Dg-284.69

interactive model:


Nickel binding site 12 out of 47 in 3mgq


Nickel binding site 12 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 12 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dt7, J: Dg8, J: Da9,

conact list:


AtomAtomDistance (A)
NiC6 J:Dt74.74
NiC2' J:Dt74.35
NiN9 J:Dg84.58
NiC8 J:Dg83.40
NiC6 J:Dg83.90
NiC5 J:Dg83.48
NiN7 J:Dg82.50
NiC4 J:Dg84.62
NiO6 J:Dg83.60
NiN6 J:Da94.72

interactive model:


Nickel binding site 13 out of 47 in 3mgq


Nickel binding site 13 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 13 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da-57, I: Dg-56, I: Da-55,

conact list:


AtomAtomDistance (A)
NiN9 I:Da-574.49
NiC8 I:Da-573.75
NiC5 I:Da-574.45
NiN7 I:Da-573.72
NiC4 I:Da-574.89
NiN9 I:Dg-564.19
NiC8 I:Dg-563.06
NiC6 I:Dg-563.26
NiN1 I:Dg-564.65
NiC5 I:Dg-562.87
NiN7 I:Dg-561.95
NiC4 I:Dg-564.11
NiO6 I:Dg-562.99
NiN6 I:Da-554.69

interactive model:


Nickel binding site 14 out of 47 in 3mgq


Nickel binding site 14 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 14 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg5, J: Da-7, J: Dg-6,

conact list:


AtomAtomDistance (A)
NiO6 I:Dg54.75
NiC8 J:Da-74.34
NiN7 J:Da-74.34
NiN9 J:Dg-64.53
NiC8 J:Dg-63.27
NiC6 J:Dg-64.07
NiC5 J:Dg-63.54
NiN7 J:Dg-62.41
NiC4 J:Dg-64.67
NiO6 J:Dg-63.84

interactive model:


Nickel binding site 15 out of 47 in 3mgq


Nickel binding site 15 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 15 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: H: Glu102, H: Lys105, H: His106,

conact list:


AtomAtomDistance (A)
NiOE2 H:Glu1022.97
NiCD H:Glu1024.18
NiCG H:Glu1024.75
NiCE H:Lys1054.73
NiNZ H:Lys1053.54
NiNE2 H:His1061.97
NiND1 H:His1063.63
NiCD2 H:His1063.25
NiCE1 H:His1062.39
NiCG H:His1064.05

interactive model:


Nickel binding site 16 out of 47 in 3mgq


Nickel binding site 16 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 16 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dc28, J: Da29, J: Dg30,

conact list:


AtomAtomDistance (A)
NiC6 J:Dc284.18
NiN1 J:Dc284.93
NiC5 J:Dc284.38
NiC2' J:Dc284.76
NiN9 J:Da294.38
NiC8 J:Da293.17
NiC6 J:Da293.83
NiC5 J:Da293.29
NiN6 J:Da293.51
NiN7 J:Da292.24
NiC4 J:Da294.45
NiC6 J:Dg304.60
NiN7 J:Dg304.88
NiO6 J:Dg303.63

interactive model:


Nickel binding site 17 out of 47 in 3mgq


Nickel binding site 17 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 17 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Da-57, J: Dg-56,

conact list:


AtomAtomDistance (A)
NiN9 J:Da-574.57
NiC8 J:Da-573.85
NiC5 J:Da-574.67
NiN7 J:Da-573.91
NiC2' J:Da-574.85
NiN9 J:Dg-564.36
NiC8 J:Dg-563.08
NiC6 J:Dg-564.08
NiC5 J:Dg-563.47
NiN7 J:Dg-562.30
NiC4 J:Dg-564.55
NiO6 J:Dg-563.91

interactive model:


Nickel binding site 18 out of 47 in 3mgq


Nickel binding site 18 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 18 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg65, I: Da66, I: Dt67, J: Dc-65, J: Dc-64,

conact list:


AtomAtomDistance (A)
NiN2 I:Dg654.86
NiN3 I:Da664.58
NiC2 I:Da664.95
NiO4' I:Dt674.80
NiC5' I:Dt674.70
NiC4' I:Dt674.71
NiC1' J:Dc-654.67
NiO2 J:Dc-654.30
NiO3' J:Dc-654.86
NiO4' J:Dc-643.86
NiC5' J:Dc-643.80
NiC4' J:Dc-644.06

interactive model:


Nickel binding site 19 out of 47 in 3mgq


Nickel binding site 19 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 19 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: His79, G: Lys36, H: Glu68,

conact list:


AtomAtomDistance (A)
NiNE2 D:His792.09
NiND1 D:His794.14
NiCD2 D:His793.04
NiCE1 D:His793.05
NiCG D:His794.17
NiNZ G:Lys364.87
NiOE2 H:Glu684.17

interactive model:


Nickel binding site 20 out of 47 in 3mgq


Nickel binding site 20 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 20 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg-35, I: Dg-34, J: Dt33, J: Dc34, I: Ni86,

conact list:


AtomAtomDistance (A)
NiN9 I:Dg-354.60
NiC8 I:Dg-353.40
NiC6 I:Dg-354.02
NiC5 I:Dg-353.55
NiN7 I:Dg-352.54
NiC4 I:Dg-354.67
NiOP2 I:Dg-354.20
NiO6 I:Dg-353.75
NiC6 I:Dg-343.53
NiN1 I:Dg-344.58
NiC5 I:Dg-344.08
NiN7 I:Dg-344.07
NiO6 I:Dg-342.69
NiO4 J:Dt334.97
NiN4 J:Dc344.40
NiNI I:Ni863.31

interactive model:


Nickel binding site 21 out of 47 in 3mgq


Nickel binding site 21 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 21 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg-6, J: Da4, J: Dg5, I: Ni85,

conact list:


AtomAtomDistance (A)
NiO6 I:Dg-64.36
NiN9 J:Da44.63
NiC8 J:Da44.18
NiN7 J:Da44.43
NiC2' J:Da44.65
NiN9 J:Dg54.58
NiC8 J:Dg53.33
NiC6 J:Dg54.07
NiC5 J:Dg53.57
NiN7 J:Dg52.47
NiC4 J:Dg54.71
NiO6 J:Dg53.79
NiNI I:Ni853.74

interactive model:


Nickel binding site 22 out of 47 in 3mgq


Nickel binding site 22 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 22 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dc28, I: Da29, I: Dg30,

conact list:


AtomAtomDistance (A)
NiC6 I:Dc284.58
NiC5 I:Dc284.69
NiN9 I:Da294.64
NiC8 I:Da293.44
NiC6 I:Da294.33
NiC5 I:Da293.75
NiN6 I:Da294.08
NiN7 I:Da292.70
NiC4 I:Da294.80
NiO6 I:Dg304.19

interactive model:


Nickel binding site 23 out of 47 in 3mgq


Nickel binding site 23 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 23 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 23 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dt70, J: Dg71, J: Da72,

conact list:


AtomAtomDistance (A)
NiC6 J:Dt704.28
NiN1 J:Dt704.88
NiC5 J:Dt704.31
NiC7 J:Dt704.34
NiC4 J:Dt704.97
NiC2' J:Dt704.92
NiN9 J:Dg714.32
NiC8 J:Dg713.13
NiC6 J:Dg713.67
NiC5 J:Dg713.20
NiN7 J:Dg712.18
NiC4 J:Dg714.36
NiO6 J:Dg713.41
NiN6 J:Da724.27

interactive model:


Nickel binding site 24 out of 47 in 3mgq


Nickel binding site 24 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 24 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 24 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt23, I: Dg24, I: Dg25, J: Dc-25, I: Ni89,

conact list:


AtomAtomDistance (A)
NiC6 I:Dt234.82
NiC5 I:Dt234.76
NiC7 I:Dt234.82
NiN9 I:Dg244.99
NiC8 I:Dg243.86
NiC6 I:Dg243.92
NiC5 I:Dg243.67
NiN7 I:Dg242.83
NiC4 I:Dg244.91
NiO6 I:Dg243.48
NiC6 I:Dg253.44
NiN1 I:Dg254.20
NiC5 I:Dg254.38
NiN7 I:Dg254.73
NiO6 I:Dg252.48
NiN4 J:Dc-253.87
NiNI I:Ni893.04

interactive model:


Nickel binding site 25 out of 47 in 3mgq


Nickel binding site 25 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 25 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 25 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dc34, J: Dt-36, J: Dg-35, J: Dg-34, J: Ni87,

conact list:


AtomAtomDistance (A)
NiN4 I:Dc344.65
NiC2' J:Dt-364.60
NiN9 J:Dg-354.41
NiC8 J:Dg-353.32
NiC6 J:Dg-354.12
NiC5 J:Dg-353.57
NiN7 J:Dg-352.64
NiC4 J:Dg-354.54
NiOP2 J:Dg-354.10
NiO6 J:Dg-354.00
NiC6 J:Dg-343.11
NiN1 J:Dg-344.01
NiC5 J:Dg-343.88
NiN7 J:Dg-344.14
NiO6 J:Dg-342.27
NiNI J:Ni873.97

interactive model:


Nickel binding site 26 out of 47 in 3mgq


Nickel binding site 26 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 26 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 26 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dc-25, J: Dg24, J: Dg25,

conact list:


AtomAtomDistance (A)
NiN4 I:Dc-254.16
NiN9 J:Dg244.00
NiC8 J:Dg242.98
NiC6 J:Dg243.65
NiN1 J:Dg244.87
NiC5 J:Dg243.07
NiN7 J:Dg242.24
NiC4 J:Dg244.04
NiOP2 J:Dg244.23
NiO6 J:Dg243.64
NiC6 J:Dg253.31
NiN1 J:Dg254.44
NiC5 J:Dg253.84
NiN7 J:Dg253.77
NiO6 J:Dg252.42

interactive model:


Nickel binding site 27 out of 47 in 3mgq


Nickel binding site 27 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 27 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 27 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt70, I: Dg71, I: Da72,

conact list:


AtomAtomDistance (A)
NiC6 I:Dt704.98
NiN9 I:Dg714.38
NiC8 I:Dg713.21
NiC6 I:Dg713.81
NiC5 I:Dg713.31
NiN7 I:Dg712.31
NiC4 I:Dg714.44
NiO6 I:Dg713.56
NiN6 I:Da724.43

interactive model:


Nickel binding site 28 out of 47 in 3mgq


Nickel binding site 28 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 28 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 28 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg64, I: Dg65,

conact list:


AtomAtomDistance (A)
NiN9 I:Dg644.61
NiC8 I:Dg643.45
NiC6 I:Dg644.90
NiC5 I:Dg644.16
NiN7 I:Dg643.09
NiC4 I:Dg644.97
NiOP2 I:Dg644.61
NiO6 I:Dg644.89
NiC8 I:Dg654.73
NiC6 I:Dg654.06
NiC5 I:Dg654.16
NiN7 I:Dg653.58
NiO6 I:Dg653.32

interactive model:


Nickel binding site 29 out of 47 in 3mgq


Nickel binding site 29 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 29 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 29 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg71, I: Da72, J: Da-70, J: Da-69,

conact list:


AtomAtomDistance (A)
NiN2 I:Dg714.24
NiO4' I:Da724.54
NiN9 J:Da-705.00
NiN3 J:Da-703.64
NiC2 J:Da-704.26
NiC1' J:Da-704.53
NiO4' J:Da-704.50
NiC4 J:Da-704.63
NiO4' J:Da-694.62
NiC5' J:Da-694.21
NiC4' J:Da-694.64

interactive model:


Nickel binding site 30 out of 47 in 3mgq


Nickel binding site 30 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 30 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 30 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: H: Val45, H: His46, H: Asp48,

conact list:


AtomAtomDistance (A)
NiO H:Val454.05
NiC H:Val454.96
NiNE2 H:His464.21
NiCB H:His464.05
NiND1 H:His462.82
NiCD2 H:His464.35
NiCE1 H:His463.35
NiCG H:His463.56
NiCA H:His464.18
NiOD2 H:Asp484.42
NiOD1 H:Asp483.78
NiCG H:Asp484.50

interactive model:


Nickel binding site 31 out of 47 in 3mgq


Nickel binding site 31 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 31 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 31 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dg-35, J: Dg-34, J: Ni84,

conact list:


AtomAtomDistance (A)
NiN9 J:Dg-354.94
NiC8 J:Dg-354.55
NiN7 J:Dg-354.96
NiC2' J:Dg-354.49
NiN9 J:Dg-344.02
NiC8 J:Dg-342.81
NiC6 J:Dg-343.52
NiN1 J:Dg-344.89
NiC5 J:Dg-342.93
NiN7 J:Dg-341.84
NiC4 J:Dg-344.07
NiO6 J:Dg-343.39
NiNI J:Ni843.97

interactive model:


Nickel binding site 32 out of 47 in 3mgq


Nickel binding site 32 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 32 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 32 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg-15, J: Dt13, J: Dg14, J: Dc15,

conact list:


AtomAtomDistance (A)
NiC6 I:Dg-154.84
NiO6 I:Dg-153.63
NiO3' J:Dt134.85
NiC2' J:Dt134.29
NiN9 J:Dg144.66
NiC8 J:Dg143.39
NiC6 J:Dg144.42
NiC5 J:Dg143.82
NiN7 J:Dg142.67
NiC4 J:Dg144.88
NiOP2 J:Dg144.95
NiO6 J:Dg144.22
NiC4 J:Dc154.86
NiN4 J:Dc153.96

interactive model:


Nickel binding site 33 out of 47 in 3mgq


Nickel binding site 33 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 33 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 33 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Da-7, I: Dg-6, J: Dg5, J: Ni82,

conact list:


AtomAtomDistance (A)
NiC8 I:Da-74.51
NiN7 I:Da-74.42
NiC8 I:Dg-63.99
NiC6 I:Dg-64.12
NiC5 I:Dg-63.88
NiN7 I:Dg-62.98
NiO6 I:Dg-63.61
NiC6 J:Dg54.95
NiO6 J:Dg54.03
NiNI J:Ni823.74

interactive model:


Nickel binding site 34 out of 47 in 3mgq


Nickel binding site 34 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 34 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 34 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg-35, I: Dg-34, I: Ni80,

conact list:


AtomAtomDistance (A)
NiN9 I:Dg-354.70
NiC8 I:Dg-353.84
NiC5 I:Dg-354.96
NiN7 I:Dg-354.02
NiOP2 I:Dg-354.98
NiC2' I:Dg-354.69
NiN9 I:Dg-344.25
NiC8 I:Dg-343.01
NiC6 I:Dg-343.94
NiC5 I:Dg-343.31
NiN7 I:Dg-342.18
NiC4 I:Dg-344.40
NiO6 I:Dg-343.80
NiNI I:Ni803.31

interactive model:


Nickel binding site 35 out of 47 in 3mgq


Nickel binding site 35 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 35 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 35 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt57, I: Dg58, I: Dc59, J: Dt-60, J: Dg-59, I: Ni91,

conact list:


AtomAtomDistance (A)
NiC2' I:Dt574.56
NiC8 I:Dg584.37
NiC6 I:Dg583.93
NiC5 I:Dg583.91
NiN7 I:Dg583.30
NiO6 I:Dg583.35
NiC5 I:Dc594.99
NiC4 I:Dc594.32
NiN4 I:Dc593.08
NiC7 J:Dt-604.84
NiC6 J:Dg-594.53
NiO6 J:Dg-593.33
NiNI I:Ni912.71

interactive model:


Nickel binding site 36 out of 47 in 3mgq


Nickel binding site 36 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 36 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 36 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: Asp24, F: Gln27,

conact list:


AtomAtomDistance (A)
NiO F:Asp244.79
NiCB F:Asp244.17
NiOD2 F:Asp242.95
NiCG F:Asp243.97
NiCB F:Gln274.80

interactive model:


Nickel binding site 37 out of 47 in 3mgq


Nickel binding site 37 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 37 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 37 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu73, A: Asp77,

conact list:


AtomAtomDistance (A)
NiO A:Glu734.21
NiCG A:Glu734.71
NiCB A:Asp774.81
NiOD2 A:Asp772.52
NiOD1 A:Asp773.51
NiCG A:Asp773.38

interactive model:


Nickel binding site 38 out of 47 in 3mgq


Nickel binding site 38 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 38 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 38 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Da-20, J: Da-19, J: Da-18,

conact list:


AtomAtomDistance (A)
NiC8 J:Da-204.88
NiN7 J:Da-204.93
NiC8 J:Da-194.02
NiC6 J:Da-194.38
NiC5 J:Da-194.03
NiN6 J:Da-193.85
NiN7 J:Da-193.07
NiN6 J:Da-184.91

interactive model:


Nickel binding site 39 out of 47 in 3mgq


Nickel binding site 39 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 39 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 39 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Da51, J: Dg52,

conact list:


AtomAtomDistance (A)
NiN9 J:Da515.00
NiC8 J:Da513.92
NiC5 J:Da514.76
NiN7 J:Da513.72
NiC8 J:Dg524.23
NiC6 J:Dg524.82
NiC5 J:Dg524.44
NiN7 J:Dg523.39
NiO6 J:Dg524.39

interactive model:


Nickel binding site 40 out of 47 in 3mgq


Nickel binding site 40 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 40 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 40 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Glu61, C: Asp90, C: Glu92,

conact list:


AtomAtomDistance (A)
NiOE2 C:Glu614.66
NiCB C:Asp904.69
NiOD2 C:Asp903.54
NiOD1 C:Asp902.45
NiCG C:Asp903.34
NiOE1 C:Glu924.32
NiCB C:Glu924.86
NiCD C:Glu924.97

interactive model:


Nickel binding site 41 out of 47 in 3mgq


Nickel binding site 41 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 41 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 41 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt50, I: Da51, I: Dg52, I: Dt53,

conact list:


AtomAtomDistance (A)
NiC7 I:Dt504.57
NiC8 I:Da514.11
NiN7 I:Da514.07
NiC8 I:Dg524.43
NiC5 I:Dg524.73
NiN7 I:Dg523.63
NiO6 I:Dg524.66
NiO4 I:Dt535.00

interactive model:


Nickel binding site 42 out of 47 in 3mgq


Nickel binding site 42 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 42 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 42 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: J: Dc-71, J: Da-70,

conact list:


AtomAtomDistance (A)
NiC3' J:Dc-714.86
NiC6 J:Dc-714.17
NiN1 J:Dc-714.84
NiC5 J:Dc-714.90
NiC1' J:Dc-714.70
NiC2' J:Dc-713.77
NiC8 J:Da-704.18
NiC5 J:Da-704.94
NiN7 J:Da-703.67
NiOP2 J:Da-704.33

interactive model:


Nickel binding site 43 out of 47 in 3mgq


Nickel binding site 43 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 43 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 43 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: G: Glu61, G: Leu65, G: Asp90, G: Glu92,

conact list:


AtomAtomDistance (A)
NiOE2 G:Glu614.62
NiCD1 G:Leu654.99
NiCB G:Asp904.21
NiOD2 G:Asp902.70
NiOD1 G:Asp902.18
NiCG G:Asp902.76
NiCA G:Asp904.87
NiN G:Glu924.72
NiOE1 G:Glu924.80
NiCB G:Glu924.37
NiCG G:Glu924.83

interactive model:


Nickel binding site 44 out of 47 in 3mgq


Nickel binding site 44 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 44 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 44 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dg24, I: Dg25, I: Ni82,

conact list:


AtomAtomDistance (A)
NiN9 I:Dg244.20
NiC8 I:Dg243.15
NiC5 I:Dg244.25
NiN7 I:Dg243.18
NiC4 I:Dg244.79
NiOP2 I:Dg244.65
NiC2' I:Dg244.82
NiN9 I:Dg254.79
NiC8 I:Dg253.78
NiC6 I:Dg253.34
NiN1 I:Dg254.69
NiC5 I:Dg253.25
NiN7 I:Dg252.63
NiC4 I:Dg254.53
NiO6 I:Dg252.84
NiNI I:Ni823.04

interactive model:


Nickel binding site 45 out of 47 in 3mgq


Nickel binding site 45 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 45 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 45 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt1, I: Dc2, J: Dt0, J: Dt1,

conact list:


AtomAtomDistance (A)
NiC2 I:Dt14.88
NiO2 I:Dt13.84
NiO4' I:Dc24.24
NiC5' I:Dc24.58
NiC4' I:Dc24.47
NiO2 J:Dt04.00
NiO4' J:Dt14.76
NiC5' J:Dt14.97

interactive model:


Nickel binding site 46 out of 47 in 3mgq


Nickel binding site 46 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 46 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 46 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dt57, I: Dg58, I: Ni87,

conact list:


AtomAtomDistance (A)
NiC3' I:Dt574.66
NiC6 I:Dt574.36
NiN1 I:Dt574.86
NiC1' I:Dt574.74
NiOP2 I:Dt574.96
NiC2' I:Dt573.56
NiN7 I:Dg584.51
NiO6 I:Dg584.24
NiNI I:Ni872.71

interactive model:


Nickel binding site 47 out of 47 in 3mgq


Nickel binding site 47 out of 47 in 3mgq
Click to enlarge
stereopicture of Nickel binding site 47 out of 47 in 3mgq
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 47 of Nickel in the PDB 3mgq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: I: Dc-65, J: Dt63, J: Dg64, J: Dg65,

conact list:


AtomAtomDistance (A)
NiN4 I:Dc-654.40
NiC6 J:Dt634.73
NiC5 J:Dt634.60
NiC7 J:Dt634.73
NiC4 J:Dt635.00
NiN9 J:Dg644.45
NiC8 J:Dg643.41
NiC6 J:Dg643.18
NiN1 J:Dg644.56
NiC5 J:Dg642.97
NiN7 J:Dg642.25
NiC4 J:Dg644.26
NiO6 J:Dg642.77
NiC2 J:Dg654.95
NiC6 J:Dg653.47
NiN1 J:Dg653.80
NiC5 J:Dg654.53
NiO6 J:Dg652.82

interactive model:




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