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Nickel in PDB 3qvq: The Structure of An Oleispira Antarctica Phosphodiesterase OLEI02445 in Complex with the Product Sn-Glycerol-3-Phosphate

Enzymatic activity of The Structure of An Oleispira Antarctica Phosphodiesterase OLEI02445 in Complex with the Product Sn-Glycerol-3-Phosphate

All present enzymatic activity of The Structure of An Oleispira Antarctica Phosphodiesterase OLEI02445 in Complex with the Product Sn-Glycerol-3-Phosphate:
3.1.4.2;

Protein crystallography data

The structure of The Structure of An Oleispira Antarctica Phosphodiesterase OLEI02445 in Complex with the Product Sn-Glycerol-3-Phosphate, PDB code: 3qvq was solved by A.U.Singer, O.Kagan, E.Evdokimova, M.E.Cuff, A.M.Edwards, A.Joachimiak, A.F.Yakunin, A.Savchenko, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.26 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.861, 92.717, 125.240, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 20.1

Other elements in 3qvq:

The structure of The Structure of An Oleispira Antarctica Phosphodiesterase OLEI02445 in Complex with the Product Sn-Glycerol-3-Phosphate also contains other interesting chemical elements:

Magnesium (Mg) 13 atoms
Chlorine (Cl) 18 atoms
Sodium (Na) 7 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the The Structure of An Oleispira Antarctica Phosphodiesterase OLEI02445 in Complex with the Product Sn-Glycerol-3-Phosphate (pdb code 3qvq). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the The Structure of An Oleispira Antarctica Phosphodiesterase OLEI02445 in Complex with the Product Sn-Glycerol-3-Phosphate, PDB code: 3qvq:

Nickel binding site 1 out of 1 in 3qvq

Go back to Nickel Binding Sites List in 3qvq
Nickel binding site 1 out of 1 in the The Structure of An Oleispira Antarctica Phosphodiesterase OLEI02445 in Complex with the Product Sn-Glycerol-3-Phosphate


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Structure of An Oleispira Antarctica Phosphodiesterase OLEI02445 in Complex with the Product Sn-Glycerol-3-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni264

b:5.2
occ:1.00
 O A:HOH379 2.2 28.9 1.0
NE2 B:HIS138 2.2 12.1 1.0
NE2 A:HIS138 2.3 11.4 1.0
O B:HOH342 2.4 7.7 1.0
O A:HOH378 2.5 7.4 1.0
CE1 B:HIS138 3.2 11.2 1.0
CE1 A:HIS138 3.2 12.9 1.0
CD2 B:HIS138 3.2 10.7 1.0
CD2 A:HIS138 3.3 11.5 1.0
CG B:GLN137 3.9 19.7 1.0
CG A:GLN137 3.9 18.7 1.0
ND1 B:HIS138 4.3 14.3 1.0
ND1 A:HIS138 4.3 13.8 1.0
CG B:HIS138 4.3 11.5 1.0
CG A:HIS138 4.4 10.0 1.0
CB A:GLN137 4.5 12.1 1.0
CB B:GLN137 4.5 12.5 1.0
CD2 A:LEU100 4.5 15.1 1.0
CD2 B:LEU100 4.6 17.1 1.0
CD B:GLN137 4.9 24.2 1.0
NE2 B:GLN137 4.9 17.8 1.0
CD A:GLN137 4.9 24.4 1.0
NE2 A:GLN137 4.9 16.6 1.0

Reference:

A.U.Singer, O.Kagan, E.Evdokimova, M.E.Cuff, A.M.Edwards, A.Joachimiak, A.F.Yakunin, A.Savchenko. The Structure of An Oleispira Antarctica Phosphodiesterase OLEI02445 in Complex with the Product Sn-Glycerol-3-Phosphate To Be Published.
Page generated: Wed Oct 9 17:45:45 2024

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