Nickel in PDB, part 16 (files: 601-640),
PDB 3qsi-3tsn
Experimental structures of coordination spheres of Nickel (Ni) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Nickel atoms. PDB files: 601-640 (PDB 3qsi-3tsn).
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3qsi (Ni: 9) - Nickel Binding Domain of Nikr From Helicobacter Pylori Disclosing Partial Metal Occupancy
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3qvq (Ni: 1) - The Structure of An Oleispira Antarctica Phosphodiesterase OLEI02445 in Complex with the Product Sn-Glycerol-3-Phosphate
Other atoms:
Mg (13);
Cl (18);
Na (7);
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3qys (Ni: 1) - Room Temperature X-Ray Structure of D-Xylose Isomerase in Complex with 0.6NI2+ Cation Bound in M2 Metal Binding Site at pH=5.8
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3r3u (Ni: 3) - Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Wt/Apo
Other atoms:
Cl (4);
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3r3z (Ni: 3) - Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Wt/Glycolate
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3rdh (Ni: 4) - X-Ray Induced Covalent Inhibition of 14-3-3
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3rdo (Ni: 1) - Crystal Structure of R7-2 Streptavidin Complexed with Biotin
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3rdq (Ni: 1) - Crystal Structure of R7-2 Streptavidin Complexed with Desthiobiotin
Other atoms:
Na (1);
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3rf7 (Ni: 1) - Crystal Structure of An Iron-Containing Alcohol Dehydrogenase (SDEN_2133) From Shewanella Denitrificans Os-217 at 2.12 A Resolution
Other atoms:
Fe (1);
Ca (2);
Cl (4);
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3rgw (Ni: 1) - Crystal Structure at 1.5 A Resolution of An H2-Reduced, O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks A Novel Iron-Sulfur Cluster
Other atoms:
Mg (1);
Fe (12);
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3rqt (Ni: 1) - 1.5 Angstrom Crystal Structure of the Complex of Ligand Binding Component of Abc-Type Import System From Staphylococcus Aureus with Nickel and Two Histidines
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3rva (Ni: 1) - Crystal Structure of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii
Other atoms:
Mn (2);
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3rvh (Ni: 2) - Crystal Structure of JMJD2A Complexed with Inhibitor
Other atoms:
Zn (2);
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3s0k (Ni: 1) - Crystal Structure of Human Glycolipid Transfer Protein Complexed with Glucosylceramide Containing Oleoyl Acyl Chain (18:1)
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3s2x (Ni: 4) - Structure of Acetyl-Coenzyme A Synthase Alpha Subunit C-Terminal Domain
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3s42 (Ni: 1) - Crystal Structure of the 3-Dehydroquinate Dehydratase (Arod) From Salmonella Enterica Typhimurium LT2 with Malonate and Boric Acid at the Active Site
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3sai (Ni: 1) - Bacuills Anthracis Dihydrofolate Reductase Bound to Propargyl-Linked Tmp Analog, UCP1015
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3set (Ni: 2) - Ni-Mediated Dimer of Maltose-Binding Protein A216H/K220H By Synthetic Symmetrization (Form I)
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3sex (Ni: 2) - Ni-Mediated Dimer of Maltose-Binding Protein A216H/K220H By Synthetic Symmetrization (Form II)
Other atoms:
I (26);
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3skd (Ni: 1) - Crystal Structure of the Thermus Thermophilus CAS3 Hd Domain in the Presence of NI2+
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3slu (Ni: 2) - Crystal Structure of NMB0315
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3sqg (Ni: 3) - Crystal Structure of A Methyl-Coenzyme M Reductase Purified From Black Sea Mats
Other atoms:
Ca (2);
Cl (1);
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3str (Ni: 1) - Strep Peptide Deformylase with A Time Dependent Thiazolidine Hydroxamic Acid
Other atoms:
Cl (1);
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3svj (Ni: 1) - Strep Peptide Deformylase with A Time Dependent Thiazolidine Amide
Other atoms:
Cl (1);
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3sw8 (Ni: 1) - Strep Peptide Deformylase with A Time Dependent Dichlorobenzamide- Reverse Hydroxamic Acid
Other atoms:
Cl (2);
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3t00 (Ni: 1) - Crystal Structure of Phosphonoacetate Hydrolase From Sinorhizobium Meliloti 1021 in Complex with Vanadate
Other atoms:
Zn (2);
V (1);
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3t4b (Ni: 17) - Crystal Structure of the Hcv Ires Pseudoknot Domain
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3t5n (Ni: 2) - 1.8A Crystal Structure of Lassa Virus Nucleoprotein in Complex with Ssrna
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3t9w (Ni: 1) - Small Laccase From Amycolatopsis Sp. Atcc 39116
Other atoms:
Cu (4);
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3ta2 (Ni: 2) - A. Fulgidus GLNK3, Mgatp/2-Og Complex
Other atoms:
Mg (3);
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3ta9 (Ni: 2) - Beta-Glucosidase A From the Halothermophile H. Orenii
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3tgx (Ni: 4) - Il-21:IL21R Complex
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3tj8 (Ni: 1) - Crystal Structure of Helicobacter Pylori Uree Bound to NI2+
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3tlp (Ni: 4) - Crystal Structure of the Fourth Bromodomain of Human Poly-Bromodomain Containing Protein 1 (PB1)
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3tng (Ni: 2) - The Crystal Structure of A Possible Phosphate Acetyl/Butaryl Transferase From Listeria Monocytogenes Egd-E.
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3toy (Ni: 3) - Crystal Structure of Enolase BRADO_4202 (Target Efi-501651) From Bradyrhizobium Sp. ORS278 with Calcium and Acetate Bound
Other atoms:
Ca (8);
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3tq0 (Ni: 2) - Crystal Structure of Leishmania Major Dihydroorotate Dehydrogenase in Complex with Fumarate
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3tqd (Ni: 1) - Structure of the 3-Deoxy-D-Manno-Octulosonate Cytidylyltransferase (Kdsb) From Coxiella Burnetii
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3tr6 (Ni: 1) - Structure of A O-Methyltransferase From Coxiella Burnetii
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3tsn (Ni: 4) - 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Campylobacter Jejuni
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