Nickel in PDB 3slu: Crystal Structure of NMB0315

The structure of Crystal Structure of NMB0315, PDB code: 3slu was solved by Y.Shen, X.Wang, X.Yang, H.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.75 / 2.41
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	195.680, 75.500, 81.640, 90.00, 94.66, 90.00
R / Rfree (%)	25.5 / 26.4

The binding sites of Nickel atom in the Crystal Structure of NMB0315 (pdb code 3slu). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of NMB0315, PDB code: 3slu:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of NMB0315


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of NMB0315 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni1 b:78.9 occ:1.00 NE2 A:HIS295 2.2 90.7 1.0 O A:HOH443 2.2 72.5 1.0 ND1 A:HIS375 2.3 80.3 1.0 OD2 A:ASP299 2.3 89.4 1.0 CE1 A:HIS375 2.7 79.2 1.0 CE1 A:HIS295 3.0 89.5 1.0 CG A:ASP299 3.0 84.9 1.0 OD1 A:ASP299 3.1 80.9 1.0 CD2 A:HIS295 3.2 89.5 1.0 CG A:HIS375 3.6 81.8 1.0 NE2 A:HIS375 3.9 80.7 1.0 ND1 A:HIS295 4.1 89.7 1.0 CG A:HIS295 4.2 88.1 1.0 CB A:HIS375 4.3 85.0 1.0 CD2 A:HIS375 4.4 79.6 1.0 CB A:ASP299 4.4 84.0 1.0 CA A:ASP299 4.8 82.9 1.0 O A:GLY131 4.8 99.2 1.0 CE1 A:HIS373 4.9 1.0 1.0 CA A:HIS375 4.9 86.6 1.0 N A:ASP299 5.0 79.1 1.0 NE2 A:HIS343 5.0 0.2 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of NMB0315


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of NMB0315 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni2 b:67.8 occ:1.00 O B:HOH463 2.1 73.9 1.0 O B:HOH462 2.2 86.4 1.0 NE2 B:HIS295 2.2 73.0 1.0 ND1 B:HIS375 2.2 62.7 1.0 OD2 B:ASP299 2.3 58.0 1.0 CG B:ASP299 3.0 66.0 1.0 OD1 B:ASP299 3.0 67.0 1.0 CE1 B:HIS375 3.0 62.9 1.0 CE1 B:HIS295 3.1 76.1 1.0 CD2 B:HIS295 3.3 73.8 1.0 CG B:HIS375 3.3 65.8 1.0 CB B:HIS375 3.8 68.9 1.0 NE2 B:HIS375 4.2 64.2 1.0 ND1 B:HIS295 4.2 74.5 1.0 NE2 B:HIS373 4.3 82.8 1.0 CG B:HIS295 4.3 74.8 1.0 CD2 B:HIS375 4.3 64.8 1.0 O B:GLY131 4.4 80.2 1.0 NE2 B:HIS343 4.4 75.6 1.0 CB B:ASP299 4.4 66.7 1.0 CA B:HIS375 4.6 70.3 1.0 CD2 B:HIS343 4.9 73.5 1.0 CA B:ASP299 5.0 69.0 1.0 O B:HIS295 5.0 79.8 1.0 CD2 B:HIS373 5.0 84.0 1.0

X.Wang, X.Yang, C.Yang, Z.Wu, H.Xu, Y.Shen. Crystal Structure of Outer Membrane Protein NMB0315 From Neisseria Meningitidis. Plos One V. 6 26845 2011.
ISSN: ESSN 1932-6203
PubMed: 22046377
DOI: 10.1371/JOURNAL.PONE.0026845