Atomistry » Nickel » PDB 3qsi-3tsn » 3slu
Atomistry »
  Nickel »
    PDB 3qsi-3tsn »
      3slu »

Nickel in PDB 3slu: Crystal Structure of NMB0315

Protein crystallography data

The structure of Crystal Structure of NMB0315, PDB code: 3slu was solved by Y.Shen, X.Wang, X.Yang, H.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.75 / 2.41
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 195.680, 75.500, 81.640, 90.00, 94.66, 90.00
R / Rfree (%) 25.5 / 26.4

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of NMB0315 (pdb code 3slu). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of NMB0315, PDB code: 3slu:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3slu

Go back to Nickel Binding Sites List in 3slu
Nickel binding site 1 out of 2 in the Crystal Structure of NMB0315


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of NMB0315 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1

b:78.9
occ:1.00
NE2 A:HIS295 2.2 90.7 1.0
O A:HOH443 2.2 72.5 1.0
ND1 A:HIS375 2.3 80.3 1.0
OD2 A:ASP299 2.3 89.4 1.0
CE1 A:HIS375 2.7 79.2 1.0
CE1 A:HIS295 3.0 89.5 1.0
CG A:ASP299 3.0 84.9 1.0
OD1 A:ASP299 3.1 80.9 1.0
CD2 A:HIS295 3.2 89.5 1.0
CG A:HIS375 3.6 81.8 1.0
NE2 A:HIS375 3.9 80.7 1.0
ND1 A:HIS295 4.1 89.7 1.0
CG A:HIS295 4.2 88.1 1.0
CB A:HIS375 4.3 85.0 1.0
CD2 A:HIS375 4.4 79.6 1.0
CB A:ASP299 4.4 84.0 1.0
CA A:ASP299 4.8 82.9 1.0
O A:GLY131 4.8 99.2 1.0
CE1 A:HIS373 4.9 1.0 1.0
CA A:HIS375 4.9 86.6 1.0
N A:ASP299 5.0 79.1 1.0
NE2 A:HIS343 5.0 0.2 1.0

Nickel binding site 2 out of 2 in 3slu

Go back to Nickel Binding Sites List in 3slu
Nickel binding site 2 out of 2 in the Crystal Structure of NMB0315


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of NMB0315 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni2

b:67.8
occ:1.00
O B:HOH463 2.1 73.9 1.0
O B:HOH462 2.2 86.4 1.0
NE2 B:HIS295 2.2 73.0 1.0
ND1 B:HIS375 2.2 62.7 1.0
OD2 B:ASP299 2.3 58.0 1.0
CG B:ASP299 3.0 66.0 1.0
OD1 B:ASP299 3.0 67.0 1.0
CE1 B:HIS375 3.0 62.9 1.0
CE1 B:HIS295 3.1 76.1 1.0
CD2 B:HIS295 3.3 73.8 1.0
CG B:HIS375 3.3 65.8 1.0
CB B:HIS375 3.8 68.9 1.0
NE2 B:HIS375 4.2 64.2 1.0
ND1 B:HIS295 4.2 74.5 1.0
NE2 B:HIS373 4.3 82.8 1.0
CG B:HIS295 4.3 74.8 1.0
CD2 B:HIS375 4.3 64.8 1.0
O B:GLY131 4.4 80.2 1.0
NE2 B:HIS343 4.4 75.6 1.0
CB B:ASP299 4.4 66.7 1.0
CA B:HIS375 4.6 70.3 1.0
CD2 B:HIS343 4.9 73.5 1.0
CA B:ASP299 5.0 69.0 1.0
O B:HIS295 5.0 79.8 1.0
CD2 B:HIS373 5.0 84.0 1.0

Reference:

X.Wang, X.Yang, C.Yang, Z.Wu, H.Xu, Y.Shen. Crystal Structure of Outer Membrane Protein NMB0315 From Neisseria Meningitidis. Plos One V. 6 26845 2011.
ISSN: ESSN 1932-6203
PubMed: 22046377
DOI: 10.1371/JOURNAL.PONE.0026845
Page generated: Wed Dec 16 01:27:41 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy