Nickel in PDB 3t5n: 1.8A Crystal Structure of Lassa Virus Nucleoprotein in Complex with Ssrna

The structure of 1.8A Crystal Structure of Lassa Virus Nucleoprotein in Complex with Ssrna, PDB code: 3t5n was solved by K.M.Hastie, T.Liu, L.B.King, N.Ngo, M.A.Zandonatti, V.L.Woods, J.C.De Latorre, E.O.Saphire, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.00 / 1.79
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	74.159, 71.737, 56.887, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 21

The binding sites of Nickel atom in the 1.8A Crystal Structure of Lassa Virus Nucleoprotein in Complex with Ssrna (pdb code 3t5n). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the 1.8A Crystal Structure of Lassa Virus Nucleoprotein in Complex with Ssrna, PDB code: 3t5n:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the 1.8A Crystal Structure of Lassa Virus Nucleoprotein in Complex with Ssrna


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of 1.8A Crystal Structure of Lassa Virus Nucleoprotein in Complex with Ssrna within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni341 b:36.9 occ:1.00 O A:HOH485 2.0 38.2 1.0 OD2 A:ASP204 2.1 31.7 1.0 NE2 A:HIS226 2.1 30.1 1.0 O A:HOH488 2.2 35.2 1.0 O A:HOH429 2.3 43.1 1.0 CG A:ASP204 2.9 33.8 1.0 OD1 A:ASP204 3.0 41.7 1.0 CD2 A:HIS226 3.1 33.3 1.0 CE1 A:HIS226 3.2 39.4 1.0 O A:HOH487 4.2 52.6 1.0 CG A:HIS226 4.2 31.9 1.0 ND1 A:HIS226 4.3 33.1 1.0 CB A:ASP204 4.3 31.1 1.0 OG A:SER225 4.3 47.4 1.0 O A:GLN200 4.7 27.3 1.0

Nickel binding site 2 out of 2 in the 1.8A Crystal Structure of Lassa Virus Nucleoprotein in Complex with Ssrna


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of 1.8A Crystal Structure of Lassa Virus Nucleoprotein in Complex with Ssrna within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni342 b:72.4 occ:1.00 CE1 A:HIS40 2.4 64.4 1.0 O A:HOH465 2.5 49.2 1.0 NE2 A:HIS40 2.9 60.3 1.0 ND1 A:HIS40 3.6 64.4 1.0 CD2 A:HIS40 4.2 57.7 1.0 CG A:HIS40 4.5 56.5 1.0 O A:HOH515 4.8 48.8 1.0

K.M.Hastie, T.Liu, S.Li, L.B.King, N.Ngo, M.A.Zandonatti, V.L.Woods, J.C.De La Torre, E.O.Saphire. Crystal Structure of the Lassa Virus Nucleoprotein-Rna Complex Reveals A Gating Mechanism For Rna Binding. Proc.Natl.Acad.Sci.Usa V. 108 19365 2011.
ISSN: ISSN 0027-8424
PubMed: 22084115
DOI: 10.1073/PNAS.1108515108