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Nickel in PDB 3rva: Crystal Structure of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii

Enzymatic activity of Crystal Structure of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii

All present enzymatic activity of Crystal Structure of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii:
3.1.8.2; 3.4.13.9;

Protein crystallography data

The structure of Crystal Structure of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii, PDB code: 3rva was solved by A.Stepankova, T.Koval, L.H.Ostergaard, J.Duskova, T.Skalova, J.Hasek, J.Dohnalek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 133.770, 49.190, 97.340, 90.00, 125.03, 90.00
R / Rfree (%) 15.6 / n/a

Other elements in 3rva:

The structure of Crystal Structure of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii (pdb code 3rva). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii, PDB code: 3rva:

Nickel binding site 1 out of 1 in 3rva

Go back to Nickel Binding Sites List in 3rva
Nickel binding site 1 out of 1 in the Crystal Structure of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni455

b:37.4
occ:1.00
 N A:GLN3 2.1 31.1 1.0
ND1 A:HIS4 2.1 26.6 0.6
N A:HIS4 2.1 28.6 1.0
N A:SER2 2.4 38.8 1.0
C A:GLN3 2.9 29.6 1.0
CG A:HIS4 2.9 26.9 0.6
C A:SER2 2.9 33.4 1.0
CA A:GLN3 3.0 32.7 1.0
CA A:HIS4 3.1 26.6 1.0
CA A:SER2 3.1 37.3 1.0
CB A:HIS4 3.1 28.1 1.0
CE1 A:HIS4 3.2 28.5 0.6
NE2 A:GLN3 3.8 48.0 1.0
CB A:SER2 4.0 39.4 1.0
CD A:GLN3 4.0 42.8 1.0
O A:SER2 4.1 33.2 1.0
CB A:GLN3 4.1 36.2 1.0
CD2 A:HIS4 4.1 26.6 0.6
O A:GLN3 4.1 26.9 1.0
NE2 A:HIS4 4.2 25.6 0.6
C A:HIS4 4.2 23.9 1.0
N A:LYS5 4.3 22.4 1.0
CG A:GLN3 4.3 39.0 1.0
OE1 A:GLN3 4.5 48.3 1.0
OG A:SER2 4.9 45.7 1.0

Reference:

A.Stepankova, J.Duskova, T.Skalova, J.Hasek, T.Koval, L.H.Ostergaard, J.Dohnalek. Organophosphorus Acid Anhydrolase From Alteromonas Macleodii: Structural Study and Functional Relationship to Prolidases. Acta Crystallogr.,Sect.F V. 69 346 2013.
ISSN: ESSN 1744-3091
PubMed: 23545636
DOI: 10.1107/S1744309113002674
Page generated: Wed Oct 9 17:46:30 2024

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