Nickel in PDB 3s0k: Crystal Structure of Human Glycolipid Transfer Protein Complexed with Glucosylceramide Containing Oleoyl Acyl Chain (18:1)

The structure of Crystal Structure of Human Glycolipid Transfer Protein Complexed with Glucosylceramide Containing Oleoyl Acyl Chain (18:1), PDB code: 3s0k was solved by A.Cabo-Bilbao, V.Samygina, A.N.Popov, B.Ochoa-Lizarralde, F.Goni-De-Cerio, D.J.Patel, R.E.Brown, L.Malinina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.659, 61.646, 67.214, 90.00, 90.00, 90.00
R / Rfree (%)	15 / 18.2

The binding sites of Nickel atom in the Crystal Structure of Human Glycolipid Transfer Protein Complexed with Glucosylceramide Containing Oleoyl Acyl Chain (18:1) (pdb code 3s0k). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Human Glycolipid Transfer Protein Complexed with Glucosylceramide Containing Oleoyl Acyl Chain (18:1), PDB code: 3s0k:

Nickel binding site 1 out of 1 in the Crystal Structure of Human Glycolipid Transfer Protein Complexed with Glucosylceramide Containing Oleoyl Acyl Chain (18:1)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Human Glycolipid Transfer Protein Complexed with Glucosylceramide Containing Oleoyl Acyl Chain (18:1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni240 b:19.2 occ:1.00 HE2 A:HIS29 1.2 16.1 0.0 HE2 A:HIS7 1.3 17.8 0.0 NE2 A:HIS29 2.1 16.5 1.0 NE2 A:HIS7 2.1 17.8 1.0 OE1 A:GLU25 2.1 19.0 1.0 OE2 A:GLU25 2.5 24.3 1.0 CD A:GLU25 2.6 20.7 1.0 CD2 A:HIS29 3.0 16.9 1.0 CD2 A:HIS7 3.1 20.0 1.0 CE1 A:HIS29 3.1 19.1 1.0 CE1 A:HIS7 3.1 18.6 1.0 HD2 A:HIS29 3.1 16.6 1.0 HD2 A:HIS7 3.2 19.1 1.0 HE1 A:HIS29 3.3 17.4 1.0 HE1 A:HIS7 3.3 19.4 1.0 HA A:ALA26 3.9 12.4 1.0 O A:GLU25 4.1 13.4 1.0 CG A:GLU25 4.1 18.6 1.0 CG A:HIS29 4.2 16.4 1.0 ND1 A:HIS29 4.2 18.8 1.0 ND1 A:HIS7 4.2 18.0 1.0 CG A:HIS7 4.2 19.1 1.0 HG3 A:GLU25 4.5 18.5 1.0 C A:GLU25 4.5 12.9 1.0 HB3 A:GLU25 4.6 15.3 1.0 HG2 A:GLU25 4.6 18.7 1.0 CA A:ALA26 4.7 12.4 1.0 N A:ALA26 4.8 12.2 1.0 CB A:GLU25 4.9 16.0 1.0 HD1 A:HIS29 5.0 18.0 0.0

V.R.Samygina, A.N.Popov, A.Cabo-Bilbao, B.Ochoa-Lizarralde, F.Goni-De-Cerio, X.Zhai, J.G.Molotkovsky, D.J.Patel, R.E.Brown, L.Malinina. Enhanced Selectivity For Sulfatide By Engineered Human Glycolipid Transfer Protein. Structure V. 19 1644 2011.
ISSN: ISSN 0969-2126
PubMed: 22078563
DOI: 10.1016/J.STR.2011.09.011