Nickel in PDB 3skd: Crystal Structure of the Thermus Thermophilus CAS3 Hd Domain in the Presence of NI2+

The structure of Crystal Structure of the Thermus Thermophilus CAS3 Hd Domain in the Presence of NI2+, PDB code: 3skd was solved by S.Bailey, S.Mulepati, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.36 / 2.00
Space group	P 43 2 2
Cell size a, b, c (Å), α, β, γ (°)	48.638, 48.638, 206.011, 90.00, 90.00, 90.00
R / Rfree (%)	17.6 / 20.6

The binding sites of Nickel atom in the Crystal Structure of the Thermus Thermophilus CAS3 Hd Domain in the Presence of NI2+ (pdb code 3skd). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Thermus Thermophilus CAS3 Hd Domain in the Presence of NI2+, PDB code: 3skd:

Nickel binding site 1 out of 1 in the Crystal Structure of the Thermus Thermophilus CAS3 Hd Domain in the Presence of NI2+


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Thermus Thermophilus CAS3 Hd Domain in the Presence of NI2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni261 b:28.6 occ:1.00 O A:HOH262 2.0 28.8 1.0 OD2 A:ASP70 2.0 29.1 1.0 OD1 A:ASP205 2.2 28.7 1.0 NE2 A:HIS69 2.3 37.2 1.0 NE2 A:HIS24 2.3 28.6 1.0 O A:HOH344 2.4 26.2 1.0 CG A:ASP70 2.9 33.1 1.0 CG A:ASP205 2.9 40.8 1.0 OD2 A:ASP205 3.1 29.4 1.0 CD2 A:HIS24 3.2 21.6 1.0 CE1 A:HIS69 3.2 24.0 1.0 CD2 A:HIS69 3.2 35.8 1.0 OD1 A:ASP70 3.3 32.4 1.0 HD2 A:HIS24 3.3 25.8 1.0 CE1 A:HIS24 3.3 28.7 1.0 HE1 A:HIS69 3.3 28.7 1.0 HD2 A:HIS69 3.4 42.9 1.0 HZ2 A:LYS73 3.5 57.6 1.0 HE1 A:HIS24 3.5 34.4 1.0 HG A:SER209 3.6 40.1 1.0 OG A:SER209 3.8 33.5 1.0 HZ1 A:LYS73 3.8 57.6 1.0 HB2 A:ASP70 4.1 28.6 1.0 NZ A:LYS73 4.1 48.0 1.0 CB A:ASP70 4.2 23.9 1.0 CB A:ASP205 4.2 22.2 1.0 HB2 A:ASP205 4.3 26.6 1.0 O A:HOH299 4.3 38.5 1.0 ND1 A:HIS69 4.3 34.4 1.0 HA A:ASP205 4.4 21.1 1.0 CG A:HIS24 4.4 25.9 1.0 CG A:HIS69 4.4 28.5 1.0 ND1 A:HIS24 4.4 22.3 1.0 HG A:SER14 4.5 44.6 1.0 HB3 A:ASP70 4.7 28.6 1.0 HE2 A:HIS105 4.7 59.5 1.0 HZ3 A:LYS73 4.7 57.6 1.0 O A:ASP205 4.8 25.3 1.0 CA A:ASP205 4.8 17.6 1.0 OG1 A:THR28 4.9 22.3 1.0 HE3 A:LYS73 4.9 52.7 1.0 HB3 A:ASP205 4.9 26.6 1.0

S.Mulepati, S.Bailey. Structural and Biochemical Analysis of Nuclease Domain of Clustered Regularly Interspaced Short Palindromic Repeat (Crispr)-Associated Protein 3 (CAS3). J.Biol.Chem. V. 286 31896 2011.
ISSN: ISSN 0021-9258
PubMed: 21775431
DOI: 10.1074/JBC.M111.270017