Nickel in PDB 3u8v: Three Dimensional Structure of the Small Metal Binding Protein, Smbp

The structure of Three Dimensional Structure of the Small Metal Binding Protein, Smbp, PDB code: 3u8v was solved by J.P.Allen, W.A.Francisco, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.68 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	35.660, 56.207, 83.923, 90.00, 90.00, 90.00
R / Rfree (%)	17 / 20.5

The binding sites of Nickel atom in the Three Dimensional Structure of the Small Metal Binding Protein, Smbp (pdb code 3u8v). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Three Dimensional Structure of the Small Metal Binding Protein, Smbp, PDB code: 3u8v:

Nickel binding site 1 out of 1 in the Three Dimensional Structure of the Small Metal Binding Protein, Smbp


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Three Dimensional Structure of the Small Metal Binding Protein, Smbp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni94 b:18.9 occ:1.00 N A:SER1 1.9 19.7 1.0 N B:SER1 1.9 20.3 1.0 NE2 A:HIS6 2.1 15.2 1.0 O B:SER1 2.1 21.3 1.0 NE2 B:HIS6 2.1 17.0 1.0 O A:SER1 2.2 20.2 1.0 C A:SER1 2.9 21.8 1.0 C B:SER1 2.9 22.9 1.0 CA A:SER1 2.9 21.3 1.0 CD2 A:HIS6 2.9 15.7 1.0 CA B:SER1 3.0 21.1 1.0 CD2 B:HIS6 3.0 18.5 1.0 CE1 B:HIS6 3.1 21.4 1.0 CE1 A:HIS6 3.2 19.8 1.0 CB B:SER1 3.7 20.1 1.0 CB A:SER1 3.7 20.3 1.0 CG A:HIS6 4.1 14.6 1.0 N A:GLY2 4.2 22.6 1.0 N B:GLY2 4.2 23.9 1.0 CG B:HIS6 4.2 18.3 1.0 ND1 A:HIS6 4.2 16.0 1.0 ND1 B:HIS6 4.2 17.6 1.0 OG A:SER1 4.3 21.0 1.0 OG B:SER1 4.3 21.6 1.0 O B:HOH129 4.4 34.1 1.0 O B:HOH98 4.6 26.8 1.0 O B:HOH122 4.7 38.3 1.0 CB B:ALA42 4.8 18.6 1.0 CA A:GLY2 4.8 23.1 1.0 CB A:ALA42 4.8 18.8 1.0 O B:HOH130 4.8 35.6 1.0 CA B:GLY2 4.9 25.8 1.0 O A:GLY2 4.9 20.5 1.0 O B:ALA42 5.0 25.1 1.0 O B:GLY2 5.0 21.5 1.0

J.P.Allen, W.A.Francisco. Three Dimensional Structure of the Small Metal Binding Protein, Smbp To Be Published.