Nickel in PDB 3zez: Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp).

Enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp).

All present enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp).:
3.6.1.23;

Protein crystallography data

The structure of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp)., PDB code: 3zez was solved by M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	39.65 / 2.80
*Space group*	P 2₁ 3
*Cell size a, b, c (Å), α, β, γ (°)*	88.657, 88.657, 88.657, 90.00, 90.00, 90.00
*R / R_free (%)*	21.648 / 26.362

Other elements in 3zez:

Magnesium

(Mg)

1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp). (pdb code 3zez). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp)., PDB code: 3zez:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3zez

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Nickel Binding Sites List in 3zez

Nickel binding site 1 out of 2 in the Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp).

Mono view

Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp). within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ni1171 b:61.9 occ:0.33	O	A:HOH2014	1.6	75.6	1.0
	OD1	A:ASP95	2.7	48.5	1.0
	OD2	A:ASP95	3.3	48.6	1.0
	CG	A:ASP95	3.3	48.3	1.0
	OE1	A:GLN40	4.1	46.1	1.0
	NZ	A:LYS93	4.1	38.3	1.0
	O	A:ASP95	4.3	47.8	1.0
	O	A:HOH2037	4.6	35.7	0.3
	CB	A:ASP95	4.8	47.5	1.0
	NE2	A:GLN40	4.9	45.4	1.0
	CD	A:GLN40	4.9	45.7	1.0

Nickel binding site 2 out of 2 in 3zez

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Nickel Binding Sites List in 3zez

Nickel binding site 2 out of 2 in the Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp).

Mono view

Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp). within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ni1172 b:78.4 occ:0.33	OG1	A:THR77	3.4	39.9	1.0
	CB	A:THR77	3.9	39.5	1.0
	O	A:HOH2027	4.1	38.3	1.0
	CG2	A:THR77	4.6	39.5	1.0

Reference:

M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades. Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. Mol.Cell V. 49 947 2013.
ISSN: ISSN 1097-2765
PubMed: 23333307
DOI: 10.1016/J.MOLCEL.2012.12.013

Page generated: Wed Oct 9 17:55:46 2024

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