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Nickel in PDB 3zez: Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp).

Enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp).

All present enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp).:
3.6.1.23;

Protein crystallography data

The structure of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp)., PDB code: 3zez was solved by M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.65 / 2.80
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 88.657, 88.657, 88.657, 90.00, 90.00, 90.00
R / Rfree (%) 21.648 / 26.362

Other elements in 3zez:

The structure of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp). also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp). (pdb code 3zez). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp)., PDB code: 3zez:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3zez

Go back to Nickel Binding Sites List in 3zez
Nickel binding site 1 out of 2 in the Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp).


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1171

b:61.9
occ:0.33
O A:HOH2014 1.6 75.6 1.0
OD1 A:ASP95 2.7 48.5 1.0
OD2 A:ASP95 3.3 48.6 1.0
CG A:ASP95 3.3 48.3 1.0
OE1 A:GLN40 4.1 46.1 1.0
NZ A:LYS93 4.1 38.3 1.0
O A:ASP95 4.3 47.8 1.0
O A:HOH2037 4.6 35.7 0.3
CB A:ASP95 4.8 47.5 1.0
NE2 A:GLN40 4.9 45.4 1.0
CD A:GLN40 4.9 45.7 1.0

Nickel binding site 2 out of 2 in 3zez

Go back to Nickel Binding Sites List in 3zez
Nickel binding site 2 out of 2 in the Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp).


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase with Dupnhpp). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1172

b:78.4
occ:0.33
OG1 A:THR77 3.4 39.9 1.0
CB A:THR77 3.9 39.5 1.0
O A:HOH2027 4.1 38.3 1.0
CG2 A:THR77 4.6 39.5 1.0

Reference:

M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades. Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. Mol.Cell V. 49 947 2013.
ISSN: ISSN 1097-2765
PubMed: 23333307
DOI: 10.1016/J.MOLCEL.2012.12.013
Page generated: Wed Oct 9 17:55:46 2024

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