Nickel in PDB 3zf2: Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase).

Enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase).

All present enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase).:
3.6.1.23;

Protein crystallography data

The structure of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase)., PDB code: 3zf2 was solved by M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	43.69 / 2.90
*Space group*	P 2₁ 3
*Cell size a, b, c (Å), α, β, γ (°)*	87.370, 87.370, 87.370, 90.00, 90.00, 90.00
*R / R_free (%)*	21.2 / 25.2

Nickel Binding Sites:

The binding sites of Nickel atom in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase). (pdb code 3zf2). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase)., PDB code: 3zf2:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3zf2

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Nickel Binding Sites List in 3zf2

Nickel binding site 1 out of 2 in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase).

Mono view

Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase). within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ni1156 b:70.7 occ:0.33	OD1	A:ASP94	2.5	49.0	1.0
	O	A:HOH2006	2.7	50.2	1.0
	CG	A:ASP94	3.3	50.6	1.0
	OD2	A:ASP94	3.3	51.8	1.0
	O	A:HOH2007	3.6	63.0	1.0
	O	A:ASP94	4.3	53.6	1.0
	O	A:HOH2029	4.6	30.0	1.0
	O3	A:TRS1158	4.7	0.1	0.3
	NZ	A:LYS92	4.7	44.1	1.0
	CB	A:ASP94	4.7	51.2	1.0
	NE2	A:GLN39	4.8	51.5	1.0
	C1	A:TRS1158	4.9	0.5	0.3

Nickel binding site 2 out of 2 in 3zf2

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Nickel Binding Sites List in 3zf2

Nickel binding site 2 out of 2 in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase).

Mono view

Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase). within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ni1159 b:0.4 occ:0.33	CB	A:GLU117	4.6	96.9	1.0
	OE1	A:GLU117	4.9	0.1	1.0
	CG	A:GLU117	5.0	99.1	1.0

Reference:

M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades. Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. Mol.Cell V. 49 947 2013.
ISSN: ISSN 1097-2765
PubMed: 23333307
DOI: 10.1016/J.MOLCEL.2012.12.013

Page generated: Wed Oct 9 17:56:20 2024

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