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Nickel in PDB 3zf6: Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A D110C S168C Mutant with Dupnhpp).

Enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A D110C S168C Mutant with Dupnhpp).

All present enzymatic activity of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A D110C S168C Mutant with Dupnhpp).:
3.6.1.23;

Protein crystallography data

The structure of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A D110C S168C Mutant with Dupnhpp)., PDB code: 3zf6 was solved by M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.71 / 2.60
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 87.460, 87.460, 87.460, 90.00, 90.00, 90.00
R / Rfree (%) 22.429 / 27.328

Nickel Binding Sites:

The binding sites of Nickel atom in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A D110C S168C Mutant with Dupnhpp). (pdb code 3zf6). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A D110C S168C Mutant with Dupnhpp)., PDB code: 3zf6:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3zf6

Go back to Nickel Binding Sites List in 3zf6
Nickel binding site 1 out of 2 in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A D110C S168C Mutant with Dupnhpp).


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A D110C S168C Mutant with Dupnhpp). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1171

b:46.2
occ:0.33
 O A:HOH2011 2.2 29.6 1.0
OD1 A:ASP95 2.7 46.1 1.0
OD2 A:ASP95 3.2 46.1 1.0
CG A:ASP95 3.3 46.0 1.0
O A:HOH2039 3.9 30.0 0.3
O A:ASP95 4.4 46.1 1.0
OE1 A:GLN40 4.4 51.0 1.0
NZ A:LYS93 4.6 41.7 1.0
CB A:ASP95 4.7 45.6 1.0
NE2 A:GLN40 4.9 48.7 1.0

Nickel binding site 2 out of 2 in 3zf6

Go back to Nickel Binding Sites List in 3zf6
Nickel binding site 2 out of 2 in the Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A D110C S168C Mutant with Dupnhpp).


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Phage Dutpases Control Transfer of Virulence Genes By A Proto- Oncogenic G Protein-Like Mechanism. (Staphylococcus Bacteriophage 80ALPHA Dutpase D81A D110C S168C Mutant with Dupnhpp). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1173

b:0.3
occ:0.33
 OG1 A:THR77 4.3 45.6 1.0
CG2 A:THR77 4.4 45.4 1.0
CB A:THR77 4.5 45.7 1.0

Reference:

M.A.Tormo-Mas, J.Donderis, M.Garcia-Caballer, A.Alt, I.Mir-Sanchis, A.Marina, J.R.Penades. Phage Dutpases Control Transfer of Virulence Genes By A Proto-Oncogenic G Protein-Like Mechanism. Mol.Cell V. 49 947 2013.
ISSN: ISSN 1097-2765
PubMed: 23333307
DOI: 10.1016/J.MOLCEL.2012.12.013
Page generated: Wed Oct 9 17:56:53 2024

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