Nickel in PDB 3zu8: Structure of CBM3B of Major Scaffoldin Subunit Scaa From Acetivibrio Cellulolyticus Determined on the Nikel Absorption Edge

The structure of Structure of CBM3B of Major Scaffoldin Subunit Scaa From Acetivibrio Cellulolyticus Determined on the Nikel Absorption Edge, PDB code: 3zu8 was solved by O.Yaniv, Y.Halfon, R.Lamed, F.Frolow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.261 / 1.80
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	52.263, 52.263, 192.938, 90.00, 90.00, 120.00
R / Rfree (%)	15.4 / 18.19

The structure of Structure of CBM3B of Major Scaffoldin Subunit Scaa From Acetivibrio Cellulolyticus Determined on the Nikel Absorption Edge also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Nickel atom in the Structure of CBM3B of Major Scaffoldin Subunit Scaa From Acetivibrio Cellulolyticus Determined on the Nikel Absorption Edge (pdb code 3zu8). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of CBM3B of Major Scaffoldin Subunit Scaa From Acetivibrio Cellulolyticus Determined on the Nikel Absorption Edge, PDB code: 3zu8:

Nickel binding site 1 out of 1 in the Structure of CBM3B of Major Scaffoldin Subunit Scaa From Acetivibrio Cellulolyticus Determined on the Nikel Absorption Edge


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of CBM3B of Major Scaffoldin Subunit Scaa From Acetivibrio Cellulolyticus Determined on the Nikel Absorption Edge within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni1156 b:47.5 occ:0.43 ND1 A:HIS3 2.5 84.9 1.0 N A:SER2 2.6 84.7 1.0 N A:GLY1 2.8 76.7 1.0 CE1 A:HIS3 2.9 86.1 1.0 N A:HIS3 3.0 87.6 1.0 C A:GLY1 3.0 82.8 1.0 CA A:GLY1 3.0 81.5 1.0 CG A:HIS3 3.4 82.2 1.0 CA A:SER2 3.5 89.4 1.0 C A:SER2 3.6 91.2 1.0 CA A:HIS3 3.9 83.8 1.0 O A:GLY1 3.9 85.2 1.0 NE2 A:HIS3 3.9 86.6 1.0 CB A:HIS3 4.0 78.7 1.0 N A:MET4 4.0 76.2 1.0 CD2 A:HIS3 4.2 85.3 1.0 C A:HIS3 4.5 81.2 1.0 CG A:MET4 4.5 62.4 1.0 O A:SER2 4.7 94.2 1.0 CB A:SER2 4.9 92.1 1.0 OD1 A:ASN5 5.0 51.0 1.0

O.Yaniv, Y.Halfon, L.J.W.Shimon, E.A.Bayer, R.Lamed, F.Frolow. Structure of CBM3B of the Major Scaffoldin Subunit Scaa From Acetivibrio Cellulolyticus Acta Crystallogr.,Sect.F V. 68 8 2012.
ISSN: ISSN 1744-3091
PubMed: 22232162
DOI: 10.1107/S174430911104807X