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Nickel in PDB 4k8o: Crystal Structure of the Atpase Domain of TAP1 with Atp (D645N, D651A Mutant)

Protein crystallography data

The structure of Crystal Structure of the Atpase Domain of TAP1 with Atp (D645N, D651A Mutant), PDB code: 4k8o was solved by A.S.Vakkasoglu, R.Gaudet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.98 / 2.65
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 54.260, 123.980, 79.910, 90.00, 90.00, 90.00
R / Rfree (%) 24.8 / 27

Other elements in 4k8o:

The structure of Crystal Structure of the Atpase Domain of TAP1 with Atp (D645N, D651A Mutant) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the Atpase Domain of TAP1 with Atp (D645N, D651A Mutant) (pdb code 4k8o). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Atpase Domain of TAP1 with Atp (D645N, D651A Mutant), PDB code: 4k8o:

Nickel binding site 1 out of 1 in 4k8o

Go back to Nickel Binding Sites List in 4k8o
Nickel binding site 1 out of 1 in the Crystal Structure of the Atpase Domain of TAP1 with Atp (D645N, D651A Mutant)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Atpase Domain of TAP1 with Atp (D645N, D651A Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni802

b:46.7
occ:0.50
NE2 A:HIS555 2.0 42.5 1.0
NE2 A:HIS551 2.1 65.0 1.0
CE1 A:HIS555 2.9 45.5 1.0
CE1 A:HIS551 2.9 64.2 1.0
CD2 A:HIS551 2.9 63.7 1.0
CD2 A:HIS555 3.1 49.4 1.0
ND1 A:HIS551 3.9 64.1 1.0
CG A:HIS551 3.9 62.5 1.0
ND1 A:HIS555 4.0 45.0 1.0
CG A:HIS555 4.1 47.0 1.0

Reference:

A.S.Vakkasoglu, R.Gaudet. Crystal Structure of the Atpase Domain of TAP1 with Atp (D645N, D651N Mutant) To Be Published.
Page generated: Wed Dec 16 01:31:38 2020

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