Nickel in PDB 4koo: Crystal Structure of WHY1 From Arabidopsis Thaliana

The structure of Crystal Structure of WHY1 From Arabidopsis Thaliana, PDB code: 4koo was solved by L.Cappadocia, J.S.Parent, N.Brisson, J.Sygusch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.28 / 1.88
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	81.592, 180.685, 116.069, 90.00, 90.00, 90.00
R / Rfree (%)	17.6 / 21.5

The binding sites of Nickel atom in the Crystal Structure of WHY1 From Arabidopsis Thaliana (pdb code 4koo). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of WHY1 From Arabidopsis Thaliana, PDB code: 4koo:

Nickel binding site 1 out of 1 in the Crystal Structure of WHY1 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of WHY1 From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni303 b:23.9 occ:1.00 NE2 A:HIS250 1.8 17.2 1.0 O A:HOH551 2.1 25.4 1.0 NE2 A:HIS248 2.2 18.8 1.0 CE1 A:HIS250 2.6 27.6 1.0 HE1 A:HIS250 2.7 33.1 1.0 CD2 A:HIS250 3.0 26.1 1.0 CE1 A:HIS248 3.1 29.3 1.0 CD2 A:HIS248 3.2 25.2 1.0 HE1 A:HIS248 3.3 35.2 1.0 HD2 A:HIS250 3.3 31.3 1.0 HD2 A:HIS248 3.4 30.3 1.0 ND1 A:HIS250 3.8 29.2 1.0 CG A:HIS250 4.0 19.2 1.0 ND1 A:HIS248 4.2 21.1 1.0 CG A:HIS248 4.3 21.3 1.0 O A:HOH535 4.3 28.9 1.0 HD1 A:HIS250 4.5 35.0 1.0

L.Cappadocia, J.S.Parent, J.Sygusch, N.Brisson. A Family Portrait: Structural Comparison of the Whirly Proteins From Arabidopsis Thaliana and Solanum Tuberosum. Acta Crystallogr.,Sect.F V. 69 1207 2013.
ISSN: ESSN 1744-3091
PubMed: 24192350
DOI: 10.1107/S1744309113028698