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Nickel in PDB 4kqb: Crystal Structure of the Golgi Casein Kinase with Mn/Adp Bound

Protein crystallography data

The structure of Crystal Structure of the Golgi Casein Kinase with Mn/Adp Bound, PDB code: 4kqb was solved by J.Xiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.43 / 3.04
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.490, 101.702, 158.765, 90.00, 90.00, 90.00
R / Rfree (%) 21.5 / 25.3

Other elements in 4kqb:

The structure of Crystal Structure of the Golgi Casein Kinase with Mn/Adp Bound also contains other interesting chemical elements:

Manganese (Mn) 4 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the Golgi Casein Kinase with Mn/Adp Bound (pdb code 4kqb). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Golgi Casein Kinase with Mn/Adp Bound, PDB code: 4kqb:

Nickel binding site 1 out of 1 in 4kqb

Go back to Nickel Binding Sites List in 4kqb
Nickel binding site 1 out of 1 in the Crystal Structure of the Golgi Casein Kinase with Mn/Adp Bound


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Golgi Casein Kinase with Mn/Adp Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni609

b:66.0
occ:1.00
NE2 A:HIS281 2.2 51.5 1.0
CD2 A:HIS281 3.0 54.0 1.0
CE1 A:HIS281 3.3 51.5 1.0
CG A:HIS281 4.2 55.7 1.0
ND1 A:HIS281 4.3 41.1 1.0

Reference:

J.Xiao, V.S.Tagliabracci, J.Wen, S.A.Kim, J.E.Dixon. Crystal Structure of the Golgi Casein Kinase. Proc.Natl.Acad.Sci.Usa V. 110 10574 2013.
ISSN: ISSN 0027-8424
PubMed: 23754375
DOI: 10.1073/PNAS.1309211110
Page generated: Wed Oct 9 18:21:41 2024

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