Nickel in PDB 4low: Structure and Identification of A Pterin Dehydratase-Like Protein As A Rubisco Assembly Factor in the Alpha-Carboxysome

The structure of Structure and Identification of A Pterin Dehydratase-Like Protein As A Rubisco Assembly Factor in the Alpha-Carboxysome, PDB code: 4low was solved by N.M.Wheatley, S.D.Gidaniyan, D.Cascio, T.O.Yeates, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.11 / 1.30
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	51.110, 51.110, 60.880, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 20.4

The binding sites of Nickel atom in the Structure and Identification of A Pterin Dehydratase-Like Protein As A Rubisco Assembly Factor in the Alpha-Carboxysome (pdb code 4low). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Structure and Identification of A Pterin Dehydratase-Like Protein As A Rubisco Assembly Factor in the Alpha-Carboxysome, PDB code: 4low:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Structure and Identification of A Pterin Dehydratase-Like Protein As A Rubisco Assembly Factor in the Alpha-Carboxysome


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure and Identification of A Pterin Dehydratase-Like Protein As A Rubisco Assembly Factor in the Alpha-Carboxysome within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni106 b:23.1 occ:0.50 NE2 A:HIS3 2.1 28.2 0.5 NE2 A:HIS5 2.1 23.0 0.5 O A:HOH254 2.1 36.3 1.0 CD2 A:HIS5 3.1 22.9 0.5 CE1 A:HIS3 3.1 29.1 0.5 CD2 A:HIS3 3.2 27.3 0.5 CE1 A:HIS5 3.2 23.4 0.5 O A:HOH226 4.2 39.2 1.0 CG A:HIS5 4.2 22.8 0.5 ND1 A:HIS3 4.3 30.4 0.5 CG A:HIS3 4.3 28.3 0.5 ND1 A:HIS5 4.3 23.4 0.5

Nickel binding site 2 out of 2 in the Structure and Identification of A Pterin Dehydratase-Like Protein As A Rubisco Assembly Factor in the Alpha-Carboxysome


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Structure and Identification of A Pterin Dehydratase-Like Protein As A Rubisco Assembly Factor in the Alpha-Carboxysome within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni107 b:0.0 occ:1.00 CE1 A:HIS8 3.0 36.4 0.5 NE2 A:HIS7 3.3 37.5 1.0 CE1 A:HIS7 3.3 37.7 1.0 ND1 A:HIS5 3.8 23.4 0.5 NE2 A:HIS8 3.8 36.1 0.5 CG A:HIS5 3.9 22.8 0.5 ND1 A:HIS8 4.1 36.9 0.5 CE1 A:HIS5 4.2 23.4 0.5 CB A:HIS5 4.3 21.6 0.5 CD2 A:HIS5 4.5 22.9 0.5 ND1 A:HIS7 4.5 38.2 1.0 CD2 A:HIS7 4.6 35.9 1.0 NE2 A:HIS5 4.6 23.0 0.5

N.M.Wheatley, C.D.Sundberg, S.D.Gidaniyan, D.Cascio, T.O.Yeates. Structure and Identification of A Pterin Dehydratase-Like Protein As A Ribulose-Bisphosphate Carboxylase/Oxygenase (Rubisco) Assembly Factor in the Alpha-Carboxysome. J.Biol.Chem. V. 289 7973 2014.
ISSN: ISSN 0021-9258
PubMed: 24459150
DOI: 10.1074/JBC.M113.531236