Nickel in PDB 5j7m: Crystal Structure of Cupin 2 Conserved Barrel Domain Protein From Kribbella Flavida Dsm 17836

The structure of Crystal Structure of Cupin 2 Conserved Barrel Domain Protein From Kribbella Flavida Dsm 17836, PDB code: 5j7m was solved by C.Chang, M.Cuff, G.Chhor, M.Endres, A.Joachimiak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.85 / 2.07
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	61.162, 61.162, 120.973, 90.00, 90.00, 120.00
R / Rfree (%)	18 / 22.4

The binding sites of Nickel atom in the Crystal Structure of Cupin 2 Conserved Barrel Domain Protein From Kribbella Flavida Dsm 17836 (pdb code 5j7m). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Cupin 2 Conserved Barrel Domain Protein From Kribbella Flavida Dsm 17836, PDB code: 5j7m:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of Cupin 2 Conserved Barrel Domain Protein From Kribbella Flavida Dsm 17836


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Cupin 2 Conserved Barrel Domain Protein From Kribbella Flavida Dsm 17836 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni202 b:66.5 occ:1.00 OD2 A:ASP49 2.2 32.4 1.0 NE2 A:HIS51 2.3 27.8 1.0 O4 A:PEG203 2.4 27.4 1.0 OE1 A:GLU55 2.4 22.7 1.0 NE2 A:HIS89 2.6 22.3 1.0 O A:EOH201 2.8 32.5 1.0 CD2 A:HIS51 3.1 15.8 1.0 CG A:ASP49 3.3 39.7 1.0 CE1 A:HIS51 3.4 20.4 1.0 CD A:GLU55 3.4 24.9 1.0 CE1 A:HIS89 3.5 27.7 1.0 C4 A:PEG203 3.5 36.9 1.0 CD2 A:HIS89 3.6 24.7 1.0 OE2 A:GLU55 3.8 29.4 1.0 C1 A:EOH201 3.8 33.5 1.0 O A:HOH334 3.9 38.2 1.0 CB A:ASP49 4.0 34.5 1.0 OD1 A:ASP49 4.3 40.5 1.0 C3 A:PEG203 4.3 38.2 1.0 CG A:HIS51 4.3 25.2 1.0 ND1 A:HIS51 4.4 22.2 1.0 O2 A:PEG203 4.5 42.7 1.0 ND1 A:HIS89 4.6 23.7 1.0 C2 A:EOH201 4.6 27.7 1.0 CG A:HIS89 4.7 24.6 1.0 CG A:GLU55 4.7 20.3 1.0 CB A:GLU55 4.9 13.0 1.0 CE A:MSE36 4.9 27.1 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of Cupin 2 Conserved Barrel Domain Protein From Kribbella Flavida Dsm 17836


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Cupin 2 Conserved Barrel Domain Protein From Kribbella Flavida Dsm 17836 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni202 b:60.2 occ:1.00 OD2 B:ASP49 2.2 38.3 1.0 NE2 B:HIS51 2.3 22.7 1.0 OE1 B:GLU55 2.3 24.5 1.0 NE2 B:HIS89 2.4 27.7 1.0 O1 B:PEG203 2.4 32.9 1.0 O B:EOH201 2.6 24.1 1.0 CE1 B:HIS89 3.1 23.9 1.0 CD2 B:HIS51 3.2 14.5 1.0 CG B:ASP49 3.3 40.1 1.0 CD B:GLU55 3.3 29.2 1.0 CE1 B:HIS51 3.3 20.3 1.0 OE2 B:GLU55 3.5 26.9 1.0 CD2 B:HIS89 3.6 25.0 1.0 C1 B:PEG203 3.6 38.6 1.0 C1 B:EOH201 3.7 27.6 1.0 CB B:ASP49 3.9 33.6 1.0 O4 B:PEG203 4.1 47.6 1.0 OD1 B:ASP49 4.2 44.9 1.0 ND1 B:HIS89 4.4 27.0 1.0 CG B:HIS51 4.4 19.5 1.0 ND1 B:HIS51 4.4 20.0 1.0 C2 B:PEG203 4.5 43.0 1.0 CG B:HIS89 4.6 26.7 1.0 C2 B:EOH201 4.6 20.9 1.0 CG B:GLU55 4.7 25.2 1.0 O2 B:PEG203 4.7 47.6 1.0 CB B:GLU55 4.8 16.7 1.0 CE B:MSE36 4.9 27.6 1.0 CD1 B:LEU83 4.9 33.4 1.0

C.Chang, M.Cuff, G.Chhor, M.Endres, A.Joachimiak. Crystal Structure of Cupin 2 Conserved Barrel Domain Protein From Kribbella Flavida Dsm 17836 To Be Published.