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Nickel in PDB 5jpt: Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Cdp

Enzymatic activity of Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Cdp

All present enzymatic activity of Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Cdp:
3.6.4.13;

Protein crystallography data

The structure of Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Cdp, PDB code: 5jpt was solved by J.Robert-Paganin, S.Rety, N.Leulliot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.31 / 2.94
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 118.070, 118.070, 252.150, 90.00, 90.00, 120.00
R / Rfree (%) 20.3 / 25.7

Other elements in 5jpt:

The structure of Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Cdp also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Cdp (pdb code 5jpt). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Cdp, PDB code: 5jpt:

Nickel binding site 1 out of 1 in 5jpt

Go back to Nickel Binding Sites List in 5jpt
Nickel binding site 1 out of 1 in the Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Cdp


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Cdp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni805

b:0.7
occ:1.00
NE2 A:HIS479 2.5 61.5 1.0
CE1 A:HIS479 3.2 62.5 1.0
CD2 A:HIS479 3.6 58.1 1.0
ND1 A:HIS479 4.4 59.6 1.0
CG1 A:VAL478 4.5 59.0 1.0
CG A:HIS479 4.6 56.7 1.0

Reference:

J.Robert-Paganin, M.Halladjian, M.Blaud, S.Lebaron, L.Delbos, F.Chardon, R.Capeyrou, O.Humbert, Y.Henry, A.K.Henras, S.Rety, N.Leulliot. Functional Link Between Deah/Rha Helicase PRP43 Activation and Atp Base Binding. Nucleic Acids Res. V. 45 1539 2017.
ISSN: ESSN 1362-4962
PubMed: 28180308
DOI: 10.1093/NAR/GKW1233
Page generated: Wed Dec 16 01:41:18 2020

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