Nickel in PDB 5jsu: The 3D Structure of the U489C Variant of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough in the Oxidized State at 1.40 Angstrom Resolution

Enzymatic activity of The 3D Structure of the U489C Variant of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough in the Oxidized State at 1.40 Angstrom Resolution

Protein crystallography data

Other elements in 5jsu:

Nickel Binding Sites:

Nickel binding site 1 out of 1 in 5jsu

Nickel Binding Sites List in 5jsu

Nickel binding site 1 out of 1 in the The 3D Structure of the U489C Variant of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough in the Oxidized State at 1.40 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The 3D Structure of the U489C Variant of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough in the Oxidized State at 1.40 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni603 b:11.3 occ:0.16 S B:H2S602 1.3 12.6 0.8 SG B:CSX75 1.8 10.2 0.3 SG B:CSX75 2.0 17.0 0.3 SG B:CSD489 2.2 12.5 0.9 FE B:FCO601 2.3 9.1 1.0 HB2 B:CSX75 2.3 11.7 0.4 SG B:CYS492 2.4 9.2 1.0 SG B:CYS78 2.5 10.8 1.0 HB3 B:CSX75 2.6 11.7 0.4 CB B:CSX75 2.7 9.8 0.4 OD2 B:CSD489 2.7 14.2 0.8 HB3 B:CSX75 2.8 17.6 0.3 CB B:CSX75 2.9 14.7 0.3 OD1 B:CSD489 2.9 14.9 0.6 OD B:CSX75 2.9 15.6 0.3 HB2 B:CSX75 3.0 11.9 0.3 SG B:CSX75 3.0 10.9 0.4 CB B:CSX75 3.1 9.9 0.3 HB2 B:CSX75 3.2 17.6 0.3 HB3 B:CYS78 3.3 10.2 1.0 C1 B:FCO601 3.4 8.1 1.0 CB B:CSD489 3.5 9.9 1.0 HB2 B:CSD489 3.5 11.8 1.0 C2 B:FCO601 3.5 8.5 1.0 HB2 B:CYS492 3.6 9.0 1.0 CB B:CYS78 3.6 8.5 1.0 H B:CYS78 3.6 9.2 1.0 HB3 B:CSX75 3.7 11.9 0.3 CB B:CYS492 3.7 7.5 1.0 O B:HOH739 3.8 19.8 0.7 HB3 B:CSD489 3.8 11.8 1.0 HB B:VAL77 3.9 10.1 1.0 H B:CYS492 3.9 8.2 1.0 C3 B:FCO601 4.0 10.0 1.0 HA B:CSX75 4.0 10.7 0.3 HD2 B:ARG422 4.0 9.5 1.0 CA B:CSX75 4.1 8.9 0.3 N B:CYS78 4.1 7.7 1.0 CA B:CSX75 4.2 8.3 0.4 CA B:CSX75 4.3 11.0 0.3 HB2 B:CYS78 4.3 10.2 1.0 N1 B:FCO601 4.3 8.8 1.0 HB3 B:CYS492 4.3 9.0 1.0 HE2 B:HIS82 4.3 9.5 1.0 H B:VAL77 4.4 8.3 1.0 HA B:CSX75 4.4 13.2 0.3 CA B:CYS78 4.4 7.7 1.0 HA B:CSX75 4.4 9.9 0.4 N B:CYS492 4.5 6.8 1.0 N2 B:FCO601 4.5 8.0 1.0 HH11 B:ARG422 4.5 9.6 1.0 CA B:CYS492 4.6 6.4 1.0 CB B:VAL77 4.8 8.4 1.0 CA B:CSD489 4.8 7.9 1.0 HA B:CYS492 4.8 7.7 1.0 HD2 B:HIS82 4.8 9.9 1.0 C B:CSX75 4.8 8.3 0.3 C B:CSX75 4.8 9.1 0.3 HG22 B:ILE74 4.8 9.8 1.0 CD B:ARG422 4.9 8.0 1.0 NH1 B:ARG422 4.9 8.0 1.0 C B:CSX75 4.9 8.0 0.4 HG3 B:GLU28 5.0 14.0 1.0

Reference: