Nickel in PDB 5jt1: The 3D Structure of Ni-Reconstituted U489C Variant of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough in the Oxidized State at 1.35 Angstrom Resolution

Enzymatic activity of The 3D Structure of Ni-Reconstituted U489C Variant of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough in the Oxidized State at 1.35 Angstrom Resolution

Protein crystallography data

Other elements in 5jt1:

Nickel Binding Sites:

Nickel binding site 1 out of 1 in 5jt1

Nickel Binding Sites List in 5jt1

Nickel binding site 1 out of 1 in the The 3D Structure of Ni-Reconstituted U489C Variant of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough in the Oxidized State at 1.35 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The 3D Structure of Ni-Reconstituted U489C Variant of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough in the Oxidized State at 1.35 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni602 b:16.9 occ:0.38 O B:HOH1056 1.6 16.1 0.6 SG B:CYS75 1.8 11.2 0.4 SG B:CSD489 2.0 18.8 0.8 SG B:CYS75 2.2 15.9 0.2 SG B:CYS75 2.3 15.5 0.3 SG B:CYS78 2.3 13.5 1.0 HB2 B:CYS75 2.4 15.0 0.1 FE B:FCO601 2.4 13.1 1.0 SG B:CSD489 2.5 20.6 0.2 OD2 B:CSD489 2.6 19.5 0.7 SG B:CYS492 2.6 13.1 1.0 OD1 B:CSD489 2.6 18.5 0.8 CB B:CYS75 2.8 12.5 0.1 HB3 B:CYS75 2.9 17.1 0.3 HB3 B:CYS75 2.9 15.0 0.1 HB2 B:CYS75 2.9 17.5 0.2 CB B:CYS75 2.9 14.6 0.2 SG B:CYS75 2.9 13.2 0.1 CB B:CYS75 3.0 14.2 0.3 HB3 B:CYS75 3.0 17.5 0.2 HB2 B:CYS75 3.2 17.1 0.3 HB3 B:CSD489 3.2 20.4 0.2 CB B:CYS75 3.2 10.4 0.4 HB2 B:CYS75 3.2 12.4 0.4 OD B:CYS75 3.3 16.0 0.2 HB3 B:CYS78 3.3 13.8 1.0 CB B:CSD489 3.3 17.0 0.2 CB B:CSD489 3.4 14.0 0.8 HB2 B:CSD489 3.5 20.4 0.2 CB B:CYS78 3.5 11.5 1.0 C1 B:FCO601 3.5 13.0 1.0 C2 B:FCO601 3.5 12.2 1.0 HB2 B:CSD489 3.5 16.8 0.8 H B:CYS78 3.5 12.8 1.0 OD B:CYS75 3.6 15.3 0.3 HB B:VAL77 3.7 14.0 1.0 HB3 B:CSD489 3.7 16.8 0.8 HB2 B:CYS492 3.8 13.5 1.0 HB3 B:CYS75 3.8 12.4 0.4 HD2 B:ARG422 3.9 13.9 1.0 CB B:CYS492 3.9 11.3 1.0 H B:CYS492 4.0 11.9 1.0 N B:CYS78 4.1 10.7 1.0 C3 B:FCO601 4.1 14.5 1.0 HA B:CYS75 4.1 13.0 0.4 HB2 B:CYS78 4.2 13.8 1.0 HH11 B:ARG422 4.2 14.6 1.0 CA B:CYS75 4.3 10.8 0.4 CA B:CYS75 4.3 11.7 0.1 CA B:CYS78 4.4 10.5 1.0 H B:VAL77 4.4 11.9 1.0 CA B:CYS75 4.4 12.7 0.2 CA B:CYS75 4.4 12.6 0.3 N1 B:FCO601 4.4 13.9 1.0 N2 B:FCO601 4.5 11.7 1.0 HE2 B:HIS82 4.5 14.0 1.0 HB3 B:CYS492 4.6 13.5 1.0 HA B:CYS75 4.6 14.1 0.1 NH1 B:ARG422 4.6 12.2 1.0 CB B:VAL77 4.7 11.7 1.0 N B:CYS492 4.7 9.9 1.0 CD B:ARG422 4.7 11.6 1.0 CA B:CSD489 4.8 11.7 0.8 HG3 B:GLU28 4.8 20.1 1.0 CA B:CSD489 4.8 13.6 0.2 HA B:CYS75 4.8 15.3 0.2 C B:CYS75 4.8 11.4 0.3 CA B:CYS492 4.9 10.5 1.0 HD3 B:ARG422 4.9 13.9 1.0 HA B:CYS75 4.9 15.1 0.3 C B:CYS75 4.9 11.6 0.2 C B:CYS75 4.9 11.3 0.1 C B:CYS75 4.9 10.7 0.4 C B:VAL77 5.0 12.0 1.0 HH12 B:ARG422 5.0 14.6 1.0 HD2 B:HIS82 5.0 14.2 1.0

Reference: