Nickel »
PDB 5mdk-5ph1 »
5odh »
Nickel in PDB 5odh: Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes
Enzymatic activity of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes
All present enzymatic activity of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes:
1.12.1.2; 1.8.98.1;
1.12.1.2; 1.8.98.1;
Protein crystallography data
The structure of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes, PDB code: 5odh
was solved by
T.Wagner,
J.Koch,
U.Ermler,
S.Shima,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.55 / 2.20 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 366.381, 97.104, 133.974, 90.00, 108.43, 90.00 |
| R / Rfree (%) | 21.4 / 24.5 |
Other elements in 5odh:
The structure of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes also contains other interesting chemical elements:
| Iron | (Fe) | 113 atoms |
Nickel Binding Sites:
The binding sites of Nickel atom in the Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes
(pdb code 5odh). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes, PDB code: 5odh:
Jump to Nickel binding site number: 1; 2;
In total 2 binding sites of Nickel where determined in the Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes, PDB code: 5odh:
Jump to Nickel binding site number: 1; 2;
Nickel binding site 1 out of 2 in 5odh
Go back to
Nickel Binding Sites List in 5odh
Nickel binding site 1 out
of 2 in the Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes within 5.0Å range:
|
Nickel binding site 2 out of 2 in 5odh
Go back to
Nickel Binding Sites List in 5odh
Nickel binding site 2 out
of 2 in the Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes within 5.0Å range:
|
Reference:
T.Wagner,
J.Koch,
U.Ermler,
S.Shima.
Methanogenic Heterodisulfide Reductase (Hdrabc-Mvhagd) Uses Two Noncubane [4FE-4S] Clusters For Reduction. Science V. 357 699 2017.
ISSN: ESSN 1095-9203
PubMed: 28818947
DOI: 10.1126/SCIENCE.AAN0425
Page generated: Thu Oct 10 06:43:29 2024
ISSN: ESSN 1095-9203
PubMed: 28818947
DOI: 10.1126/SCIENCE.AAN0425
Last articles
Zn in 9JYWZn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
