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Nickel in PDB 5odh: Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes
Enzymatic activity of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes
All present enzymatic activity of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes:
1.12.1.2; 1.8.98.1;
1.12.1.2; 1.8.98.1;
Protein crystallography data
The structure of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes, PDB code: 5odh
was solved by
T.Wagner,
J.Koch,
U.Ermler,
S.Shima,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.55 / 2.20 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 366.381, 97.104, 133.974, 90.00, 108.43, 90.00 |
| R / Rfree (%) | 21.4 / 24.5 |
Other elements in 5odh:
The structure of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes also contains other interesting chemical elements:
| Iron | (Fe) | 113 atoms |
Nickel Binding Sites:
The binding sites of Nickel atom in the Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes
(pdb code 5odh). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes, PDB code: 5odh:
Jump to Nickel binding site number: 1; 2;
In total 2 binding sites of Nickel where determined in the Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes, PDB code: 5odh:
Jump to Nickel binding site number: 1; 2;
Nickel binding site 1 out of 2 in 5odh
Go back to
Nickel Binding Sites List in 5odh
Nickel binding site 1 out
of 2 in the Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes within 5.0Å range:
|
Nickel binding site 2 out of 2 in 5odh
Go back to
Nickel Binding Sites List in 5odh
Nickel binding site 2 out
of 2 in the Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Heterodisulfide Reductase / [Nife]-Hydrogenase Complex From Methanothermococcus Thermolithotrophicus Soaked with Heterodisulfide For 3.5 Minutes within 5.0Å range:
|
Reference:
T.Wagner,
J.Koch,
U.Ermler,
S.Shima.
Methanogenic Heterodisulfide Reductase (Hdrabc-Mvhagd) Uses Two Noncubane [4FE-4S] Clusters For Reduction. Science V. 357 699 2017.
ISSN: ESSN 1095-9203
PubMed: 28818947
DOI: 10.1126/SCIENCE.AAN0425
Page generated: Wed Dec 16 01:42:20 2020
ISSN: ESSN 1095-9203
PubMed: 28818947
DOI: 10.1126/SCIENCE.AAN0425
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