Nickel in PDB 5u9e: Structure of the Regulatory Domain of the Arac Family Transcriptional Activator Rhar

The structure of Structure of the Regulatory Domain of the Arac Family Transcriptional Activator Rhar, PDB code: 5u9e was solved by H.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.78 / 2.02
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	100.618, 100.618, 95.204, 90.00, 90.00, 90.00
R / Rfree (%)	16.5 / 19.5

The binding sites of Nickel atom in the Structure of the Regulatory Domain of the Arac Family Transcriptional Activator Rhar (pdb code 5u9e). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Structure of the Regulatory Domain of the Arac Family Transcriptional Activator Rhar, PDB code: 5u9e:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Structure of the Regulatory Domain of the Arac Family Transcriptional Activator Rhar


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the Regulatory Domain of the Arac Family Transcriptional Activator Rhar within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni202 b:34.7 occ:1.00 NE2 A:HIS36 2.1 30.8 1.0 NE2 A:HIS74 2.1 27.9 1.0 O3 A:RM4201 2.2 58.3 0.9 O4 A:RM4201 2.2 59.0 0.9 NE2 A:HIS34 2.3 31.7 1.0 OE2 A:GLU40 2.3 23.9 1.0 C3 A:RM4201 3.0 63.8 0.9 C4 A:RM4201 3.0 69.1 0.9 CD2 A:HIS36 3.0 27.2 1.0 CE1 A:HIS74 3.0 32.2 1.0 CD A:GLU40 3.1 30.9 1.0 CE1 A:HIS36 3.2 32.6 1.0 CD2 A:HIS74 3.2 34.6 1.0 CD2 A:HIS34 3.2 32.1 1.0 CE1 A:HIS34 3.2 32.2 1.0 OE1 A:GLU40 3.3 32.8 1.0 ND1 A:HIS74 4.2 31.9 1.0 CG A:HIS36 4.2 34.4 1.0 OH A:TYR76 4.2 60.1 1.0 ND1 A:HIS36 4.2 31.0 1.0 CG A:HIS74 4.3 29.0 1.0 C2 A:RM4201 4.3 68.5 0.9 ND1 A:HIS34 4.4 36.7 1.0 C5 A:RM4201 4.4 76.0 0.9 CG A:HIS34 4.4 34.6 1.0 CG A:GLU40 4.5 23.3 1.0 O2 A:RM4201 4.6 79.8 0.9 CD1 A:LEU7 4.7 35.6 1.0 C6 A:RM4201 5.0 76.1 0.9

Nickel binding site 2 out of 2 in the Structure of the Regulatory Domain of the Arac Family Transcriptional Activator Rhar


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Structure of the Regulatory Domain of the Arac Family Transcriptional Activator Rhar within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni302 b:43.9 occ:1.00 O4 B:RM4301 2.0 33.6 0.8 O3 B:RM4301 2.1 33.6 0.8 NE2 B:HIS74 2.2 47.5 1.0 NE2 B:HIS36 2.3 45.9 1.0 OE2 B:GLU40 2.3 34.5 1.0 NE2 B:HIS34 2.4 42.4 1.0 C3 B:RM4301 2.8 45.1 0.8 C4 B:RM4301 2.9 43.6 0.8 CD2 B:HIS36 3.0 39.1 1.0 CE1 B:HIS74 3.0 41.3 1.0 CD B:GLU40 3.1 37.8 1.0 OE1 B:GLU40 3.2 43.8 1.0 CE1 B:HIS34 3.3 43.6 1.0 CD2 B:HIS74 3.3 44.3 1.0 CD2 B:HIS34 3.4 44.7 1.0 CE1 B:HIS36 3.4 45.4 1.0 OH B:TYR76 4.0 65.1 1.0 C5 B:RM4301 4.2 51.5 0.8 ND1 B:HIS74 4.2 41.8 1.0 C2 B:RM4301 4.2 55.5 0.8 CG B:HIS36 4.3 46.7 1.0 CG B:HIS74 4.3 45.1 1.0 ND1 B:HIS34 4.4 51.7 1.0 ND1 B:HIS36 4.4 46.6 1.0 CG B:GLU40 4.5 30.5 1.0 CG B:HIS34 4.5 47.4 1.0 O2 B:RM4301 4.5 64.9 0.8 CD1 B:LEU7 4.8 47.3 1.0 CZ B:TYR76 4.9 70.3 1.0 C6 B:RM4301 4.9 56.4 0.8 CE1 B:TYR76 4.9 69.2 1.0 OD1 B:ASN86 5.0 55.2 1.0

J.Lin, H.Zhao, D.Shaath, G.Wehmeye, A.Kolin, S.Egan. Structure of the Regulatory Domain of the Arac Family Transcriptional Activator Rhar To Be Published.