Nickel in PDB 5x57: Structure of Gar Domain of ACF7

The structure of Structure of Gar Domain of ACF7, PDB code: 5x57 was solved by F.Yang, T.Wang, Y.Zhang, X.Y.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.84 / 1.45
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	74.040, 45.990, 25.620, 90.00, 90.00, 90.00
R / Rfree (%)	12.6 / 16.5

The binding sites of Nickel atom in the Structure of Gar Domain of ACF7 (pdb code 5x57). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of Gar Domain of ACF7, PDB code: 5x57:

Nickel binding site 1 out of 1 in the Structure of Gar Domain of ACF7


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Gar Domain of ACF7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni101 b:7.1 occ:1.00 OD1 A:ASP91 2.0 7.5 1.0 SG A:CYS38 2.3 8.1 1.0 SG A:CYS93 2.3 7.8 1.0 SG A:CYS40 2.3 8.2 1.0 CG A:ASP91 2.8 8.1 1.0 H A:CYS40 2.8 10.9 1.0 OD2 A:ASP91 2.9 8.3 1.0 H A:CYS93 2.9 9.0 1.0 HB3 A:CYS93 3.0 9.3 1.0 H A:LYS39 3.2 10.5 1.0 HA A:CYS38 3.3 9.7 1.0 HB2 A:CYS40 3.3 9.9 1.0 CB A:CYS93 3.3 7.8 1.0 CB A:CYS38 3.3 9.1 1.0 CB A:CYS40 3.4 8.2 1.0 HB2 A:CYS38 3.4 10.9 1.0 HB2 A:PHE44 3.4 16.8 1.0 N A:CYS40 3.5 9.1 1.0 CA A:CYS38 3.7 8.1 1.0 N A:CYS93 3.7 7.5 1.0 HD2 A:PRO92 3.8 9.4 1.0 N A:LYS39 3.8 8.7 1.0 H A:PHE44 3.9 16.2 1.0 CA A:CYS40 4.0 9.3 1.0 HB2 A:CYS93 4.1 9.3 1.0 CA A:CYS93 4.1 7.4 1.0 C A:CYS38 4.2 8.8 1.0 HB3 A:CYS38 4.2 10.9 1.0 CB A:ASP91 4.2 8.0 1.0 HB3 A:CYS40 4.2 9.9 1.0 CB A:PHE44 4.3 14.0 1.0 HB3 A:PHE44 4.3 16.8 1.0 HA A:CYS40 4.4 11.1 1.0 HG3 A:ARG94 4.4 10.8 1.0 HE A:ARG94 4.5 12.9 1.0 N A:PRO92 4.5 7.6 1.0 CD A:PRO92 4.5 7.8 1.0 C A:ASP91 4.5 7.8 1.0 C A:LYS39 4.5 9.2 1.0 HB3 A:ASP91 4.6 9.6 1.0 N A:PHE44 4.6 13.5 1.0 HA A:ASP91 4.7 9.5 1.0 HA A:ARG43 4.7 16.3 0.5 HA A:ARG43 4.7 17.2 0.5 CA A:ASP91 4.7 7.9 1.0 CA A:LYS39 4.7 9.1 1.0 HB2 A:ASP91 4.8 9.6 1.0 HB2 A:PRO92 4.8 11.7 1.0 HH21 A:ARG94 4.8 13.5 1.0 HA A:CYS93 4.8 8.9 1.0 C A:PRO92 4.9 7.9 1.0 H A:ARG94 4.9 8.8 1.0 C A:CYS93 5.0 8.9 1.0 O A:ASP91 5.0 8.0 1.0

Y.Ma, J.Yue, Y.Zhang, C.Shi, M.Odenwald, W.G.Liang, Q.Wei, A.Goel, X.Gou, J.Zhang, S.Y.Chen, W.J.Tang, J.R.Turner, F.Yang, H.Liang, H.Qin, X.Wu. ACF7 Regulates Inflammatory Colitis and Intestinal Wound Response By Orchestrating Tight Junction Dynamics. Nat Commun V. 8 15375 2017.
ISSN: ESSN 2041-1723
PubMed: 28541346
DOI: 10.1038/NCOMMS15375