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Nickel in PDB 5y34: Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition
Enzymatic activity of Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition
All present enzymatic activity of Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition:
1.12.5.1;
1.12.5.1;
Protein crystallography data
The structure of Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition, PDB code: 5y34
was solved by
Y.Shomura,
K.S.Yoon,
H.Nishihara,
Y.Higuchi,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 19.89 / 1.32 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 75.628, 116.943, 113.337, 90.00, 91.42, 90.00 |
| R / Rfree (%) | 13.1 / 15.8 |
Other elements in 5y34:
The structure of Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
| Iron | (Fe) | 26 atoms |
Nickel Binding Sites:
The binding sites of Nickel atom in the Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition
(pdb code 5y34). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition, PDB code: 5y34:
Jump to Nickel binding site number: 1; 2;
In total 2 binding sites of Nickel where determined in the Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition, PDB code: 5y34:
Jump to Nickel binding site number: 1; 2;
Nickel binding site 1 out of 2 in 5y34
Go back to
Nickel Binding Sites List in 5y34
Nickel binding site 1 out
of 2 in the Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition within 5.0Å range:
|
Nickel binding site 2 out of 2 in 5y34
Go back to
Nickel Binding Sites List in 5y34
Nickel binding site 2 out
of 2 in the Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition within 5.0Å range:
|
Reference:
Y.Shomura,
K.S.Yoon,
H.Nishihara,
Y.Higuchi.
Structural Basis For A [4FE-3S] Cluster in the Oxygen-Tolerant Membrane-Bound [Nife]-Hydrogenase Nature V. 479 253 2011.
ISSN: ESSN 1476-4687
PubMed: 22002607
DOI: 10.1038/NATURE10504
Page generated: Thu Oct 10 08:16:29 2024
ISSN: ESSN 1476-4687
PubMed: 22002607
DOI: 10.1038/NATURE10504
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