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Nickel in PDB, part 46 (files: 1801-1840), PDB 5xkt-6c8z

Experimental structures of coordination spheres of Nickel (Ni) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Nickel atoms. PDB files: 1801-1840 (PDB 5xkt-6c8z).
  1. 5xkt (Ni: 3) - Klebsiella Pneumoniae Ureg in Complex with Gmppnp and Nickel
  2. 5xle (Ni: 1) - Crystal Structure of Anaerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
    Other atoms: Mg (1); Fe (12);
  3. 5xlf (Ni: 1) - Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
    Other atoms: Mg (1); Fe (12);
  4. 5xlg (Ni: 1) - Crystal Structure of Anaerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
    Other atoms: Mg (1); Fe (12);
  5. 5xlh (Ni: 1) - Crystal Structure of Aerobically Purified and Aerobically Crystallized For 12WEEKS D. Vulgaris Miyazaki F [Nife]-Hydrogenase
    Other atoms: Mg (1); Fe (12);
  6. 5xvb (Ni: 2) - [Nife]-Hydrogenase (Hyb-Type) From Citrobacter Sp. S-77 in An H2- Reduced Condition
    Other atoms: Mg (2); Fe (24);
  7. 5xvc (Ni: 2) - [Nife]-Hydrogenase (Hyb-Type) From Citrobacter Sp. S-77 in A Ferricyanide-Oxidized Condition
    Other atoms: Mg (2); Fe (24);
  8. 5xvd (Ni: 2) - [Nife]-Hydrogenase (Hyb-Type) From Citrobacter Sp. S-77 in An Air- Oxidized Condition
    Other atoms: Mg (2); Fe (32); Na (2);
  9. 5y2j (Ni: 2) - Crystal Structure of the Oligomerization Domain of NSP4 From Rotavirus Strain MF66
  10. 5y34 (Ni: 2) - Membrane-Bound Respiratory [Nife]-Hydrogenase From Hydrogenovibrio Marinus in A Ferricyanide-Oxidized Condition
    Other atoms: Mg (2); Fe (26);
  11. 5y4n (Ni: 1) - Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
    Other atoms: Mg (1); Fe (12);
  12. 5y9r (Ni: 2) - Crystal Structure of the Oligomerization Domain of NSP4 From Rotavirus Strain MF66
    Other atoms: Cd (1);
  13. 5yh8 (Ni: 1) - The Crystal Structure of Staphylococcus Aureus Cnta in Complex with Staphylopine and Nickel
  14. 5yir (Ni: 10) - Crystal Structure of Ankb Lir/Gabarap Complex
  15. 5ykn (Ni: 1) - Crystal Structure of Arabidopsis Thaliana JMJ14 Catalytic Domain
    Other atoms: Zn (2);
  16. 5yko (Ni: 1) - Crystal Structure of Arabidopsis Thaliana JMJ14 Catalytic Domain in Complex with Nog and H3K4ME3 Peptide
    Other atoms: Zn (2);
  17. 5yng (Ni: 2) - Crystal Structure of SZ348 in Complex with Cyclopentene Oxide
    Other atoms: K (2);
  18. 5yqw (Ni: 1) - Structure and Function of A Novel Periplasmic Chitooligosaccharide- Binding Protein From Marine Vibrio Bacteria
  19. 5zc7 (Ni: 1) - Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group).
    Other atoms: Cl (3); Na (2);
  20. 5zq8 (Ni: 2) - Crystal Structure of Sprlmcd with U747 Stemloop Rna
  21. 5zt9 (Ni: 4) - Sirb From Bacillus Subtilis with NI2+
  22. 5zyp (Ni: 3) - Structure of the Yeast CTR9/PAF1 Complex
  23. 6a1i (Ni: 1) - Crystal Structure of A Synthase 1 From Santalum Album
  24. 6a6f (Ni: 6) - Crystal Structure of Putative Iron-Sulfur Cluster Assembly Scaffold Protein For Suf System (Fisufu) From Thermophilic Fervidobacterium Islandicum Aw-1
    Other atoms: Zn (2);
  25. 6ao6 (Ni: 1) - Crystal Structure of H108A Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)
    Other atoms: Cu (1);
  26. 6apz (Ni: 1) - Crystal Structure of Mycobacterium Tuberculosis Malate Synthase in Complex with 3-Hydroxy-Phenyldiketoacid
    Other atoms: Mg (1);
  27. 6asr (Ni: 4) - REV1 UBM2 Domain Complex with Ubiquitin
  28. 6asu (Ni: 1) - Crystal Structure of Mycobacterium Tuberculosis Malate Synthase in Complex with 4-Methyl-Phenyldiketoacid
    Other atoms: Mg (1);
  29. 6b6v (Ni: 2) - Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, As-Isolated (Protein Batch 1), Canonical C-Cluster
    Other atoms: Fe (18);
  30. 6b6w (Ni: 2) - Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, As-Isolated (Protein Batch 2), Oxidized C-Cluster
    Other atoms: Mg (4); Fe (26); Cl (2);
  31. 6b6x (Ni: 2) - Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster
    Other atoms: Mg (4); Fe (18); Cl (3);
  32. 6b6y (Ni: 2) - Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced Then Oxygen-Exposed (Protein Batch 2), Oxidized C-Cluster
    Other atoms: Fe (18);
  33. 6bi4 (Ni: 2) - 2.9 Angstrom Resolution Crystal Structure of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames in Complex with Nad.
  34. 6bn1 (Ni: 1) - Salvador Hippo Sarah Domain Complex
  35. 6br6 (Ni: 1) - N2 Neuraminidase in Complex with A Novel Antiviral Compound
    Other atoms: Ca (1);
  36. 6btx (Ni: 1) - Structure of A Bacterial Metal Transporter
    Other atoms: Ca (1);
  37. 6bwr (Ni: 4) - LARC2, the C-Terminal Domain of A Cyclometallase Involved in the Synthesis of the Npn Cofactor of Lactate Racemase, in Complex with Nickel
  38. 6c1w (Ni: 3) - A Tethered Niacin-Derived Pincer Complex with A Nickel-Carbon or Sulfite-Carbon Bond in Lactate Racemase
  39. 6c5i (Ni: 2) - Unliganded S25-5 Fab
    Other atoms: Cl (1);
  40. 6c8z (Ni: 3) - Last Common Ancestor of Adp-Dependent Phosphofructokinases From Methanosarcinales
    Other atoms: Mg (1);
Page generated: Fri Dec 24 10:00:21 2021

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