Nickel in PDB 5yh8: The Crystal Structure of Staphylococcus Aureus Cnta in Complex with Staphylopine and Nickel

The structure of The Crystal Structure of Staphylococcus Aureus Cnta in Complex with Staphylopine and Nickel, PDB code: 5yh8 was solved by Q.Ji, L.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.88 / 2.12
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	70.782, 85.474, 86.315, 90.00, 90.00, 90.00
R / Rfree (%)	15.5 / 22.9

The binding sites of Nickel atom in the The Crystal Structure of Staphylococcus Aureus Cnta in Complex with Staphylopine and Nickel (pdb code 5yh8). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the The Crystal Structure of Staphylococcus Aureus Cnta in Complex with Staphylopine and Nickel, PDB code: 5yh8:

Nickel binding site 1 out of 1 in the The Crystal Structure of Staphylococcus Aureus Cnta in Complex with Staphylopine and Nickel


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Crystal Structure of Staphylococcus Aureus Cnta in Complex with Staphylopine and Nickel within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni601 b:22.1 occ:1.00 OXT A:8UX602 2.0 22.7 1.0 OAC A:8UX602 2.0 21.9 1.0 OAG A:8UX602 2.0 20.9 1.0 NAP A:8UX602 2.1 22.2 1.0 N A:8UX602 2.1 25.2 1.0 NAN A:8UX602 2.3 24.8 1.0 CAV A:8UX602 2.7 25.1 1.0 CAR A:8UX602 2.7 23.3 1.0 CAS A:8UX602 2.8 22.1 1.0 C A:8UX602 2.8 22.8 1.0 CAW A:8UX602 2.8 21.8 1.0 CAJ A:8UX602 2.9 26.4 1.0 CA A:8UX602 3.0 22.8 1.0 CAT A:8UX602 3.0 21.5 1.0 CAH A:8UX602 3.1 21.5 1.0 CAK A:8UX602 3.3 25.6 1.0 CAL A:8UX602 3.5 20.7 1.0 O1 A:GOL611 3.8 27.1 1.0 OAF A:8UX602 4.0 24.0 1.0 OAD A:8UX602 4.0 21.6 1.0 O A:8UX602 4.0 21.4 1.0 CAI A:8UX602 4.1 19.8 1.0 NAM A:8UX602 4.2 20.7 1.0 CB A:8UX602 4.2 23.4 1.0 NH2 A:ARG140 4.3 20.7 1.0 NH2 A:ARG393 4.6 23.8 1.0 C1 A:GOL611 4.9 33.7 1.0 CZ2 A:TRP406 4.9 22.4 1.0 SD A:MET31 4.9 23.9 1.0 NH2 A:ARG225 4.9 25.1 1.0

L.Song, Y.Zhang, W.Chen, T.Gu, S.Y.Zhang, Q.Ji. Mechanistic Insights Into Staphylopine-Mediated Metal Acquisition Proc. Natl. Acad. Sci. V. 115 3942 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29581261
DOI: 10.1073/PNAS.1718382115