Nickel in PDB 6b6w: Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, As-Isolated (Protein Batch 2), Oxidized C-Cluster

Enzymatic activity of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, As-Isolated (Protein Batch 2), Oxidized C-Cluster

Protein crystallography data

Other elements in 6b6w:

Nickel Binding Sites:

Nickel binding site 1 out of 2 in 6b6w

Nickel Binding Sites List in 6b6w

Nickel binding site 1 out of 2 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, As-Isolated (Protein Batch 2), Oxidized C-Cluster


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, As-Isolated (Protein Batch 2), Oxidized C-Cluster within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni705 b:21.1 occ:0.70 NI A:CUV705 0.0 21.1 0.7 FE2 A:XCC704 1.2 23.4 0.2 NE2 A:HIS266 1.9 21.9 0.2 NE2 A:HIS266 2.2 22.5 0.8 NZ A:LYS556 2.3 32.2 1.0 SG A:CYS519 2.5 22.8 0.7 SG A:CYS302 2.6 19.6 0.8 SG A:CYS302 2.7 17.2 0.2 CD2 A:HIS266 2.7 18.6 0.2 CD2 A:HIS266 2.8 17.7 0.8 FE2 A:CUV705 3.0 28.5 0.8 CE1 A:HIS266 3.1 20.1 0.2 CE A:LYS556 3.2 31.1 1.0 SG A:CYS519 3.2 24.6 0.3 FE1 A:CUV705 3.4 23.8 0.8 CB A:CYS519 3.4 17.9 0.7 CB A:CYS519 3.4 17.7 0.3 CE1 A:HIS266 3.4 22.5 0.8 S3 A:XCC704 3.5 33.0 0.2 S4 A:XCC704 3.5 16.3 0.2 FE1 A:XCC704 3.7 29.6 0.2 CB A:CYS302 3.7 18.6 0.2 CB A:CYS302 3.8 19.0 0.8 S4 A:CUV705 3.8 24.9 0.8 CG A:HIS266 3.9 19.6 0.2 ND1 A:HIS266 4.1 20.5 0.2 CG A:HIS266 4.1 17.8 0.8 ND1 A:HIS266 4.3 21.0 0.8 SG A:CYS340 4.5 22.5 0.2 CD A:LYS556 4.6 27.5 1.0 SG A:CYS340 4.6 21.5 0.8 CA A:CYS519 4.6 14.6 0.7 CA A:CYS519 4.6 15.2 0.3 N A:CYS519 4.6 14.8 0.7 N A:CYS519 4.6 14.9 0.3 SG A:CYS301 4.7 28.4 1.0 S1 A:XCC704 4.7 13.5 0.2 FE4 A:XCC704 4.8 27.1 0.2 OE1 A:GLN339 4.9 18.5 0.5 FE3 A:XCC704 4.9 22.1 0.2 S3 A:CUV705 5.0 25.5 0.8 FE3 A:CUV705 5.0 23.2 0.8 CA A:CYS302 5.0 14.8 0.8 O A:HOH824 5.0 30.5 1.0

Nickel binding site 2 out of 2 in 6b6w

Nickel Binding Sites List in 6b6w

Nickel binding site 2 out of 2 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, As-Isolated (Protein Batch 2), Oxidized C-Cluster


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, As-Isolated (Protein Batch 2), Oxidized C-Cluster within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni712 b:18.6 occ:0.70 NI B:CUV712 0.0 18.6 0.7 FE2 B:XCC711 1.3 17.9 0.2 NE2 B:HIS266 1.8 17.4 0.2 NE2 B:HIS266 2.2 19.9 0.8 NZ B:LYS556 2.3 23.0 1.0 SG B:CYS519 2.4 18.7 0.8 SG B:CYS302 2.6 21.1 0.8 CD2 B:HIS266 2.7 17.5 0.2 CD2 B:HIS266 2.8 17.6 0.8 SG B:CYS302 2.9 7.9 0.2 CE1 B:HIS266 3.0 17.3 0.2 FE2 B:CUV712 3.1 22.8 0.8 CE B:LYS556 3.2 27.4 1.0 FE1 B:CUV712 3.3 21.9 0.8 SG B:CYS519 3.4 18.9 0.2 CE1 B:HIS266 3.4 18.4 0.8 CB B:CYS519 3.5 14.1 0.8 CB B:CYS519 3.5 14.5 0.2 S4 B:XCC711 3.5 15.6 0.2 S3 B:XCC711 3.6 30.0 0.2 CB B:CYS302 3.8 14.2 0.8 CB B:CYS302 3.8 16.2 0.2 FE1 B:XCC711 3.8 23.1 0.2 S4 B:CUV712 3.8 21.9 0.8 CG B:HIS266 3.9 17.4 0.2 ND1 B:HIS266 4.0 16.4 0.2 CG B:HIS266 4.1 17.1 0.8 ND1 B:HIS266 4.3 14.7 0.8 SG B:CYS340 4.5 17.8 0.8 CD B:LYS556 4.6 22.9 1.0 SG B:CYS340 4.6 19.6 0.2 SG B:CYS301 4.7 23.4 1.0 CA B:CYS519 4.7 12.7 0.8 N B:CYS519 4.7 13.2 0.8 N B:CYS519 4.7 13.8 0.2 CA B:CYS519 4.7 13.4 0.2 O B:HOH841 4.8 29.3 1.0 S1 B:XCC711 4.8 14.5 0.2 OE1 B:GLN339 4.8 21.4 0.5 FE4 B:XCC711 4.9 31.1 0.2 NE2 B:HIS97 5.0 15.4 1.0 CA B:CYS302 5.0 12.2 0.8

Reference: