Nickel in PDB 6b6y: Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced Then Oxygen-Exposed (Protein Batch 2), Oxidized C-Cluster

Enzymatic activity of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced Then Oxygen-Exposed (Protein Batch 2), Oxidized C-Cluster

Protein crystallography data

Other elements in 6b6y:

Nickel Binding Sites:

Nickel binding site 1 out of 2 in 6b6y

Nickel Binding Sites List in 6b6y

Nickel binding site 1 out of 2 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced Then Oxygen-Exposed (Protein Batch 2), Oxidized C-Cluster


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced Then Oxygen-Exposed (Protein Batch 2), Oxidized C-Cluster within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni702 b:49.5 occ:0.70 NI A:CUV702 0.0 49.5 0.7 NE2 A:HIS266 2.3 67.0 1.0 SG A:CYS519 2.5 41.5 0.5 NZ A:LYS556 2.5 56.2 1.0 SG A:CYS302 2.6 59.5 1.0 FE2 A:CUV702 2.8 77.3 1.0 CB A:CYS519 3.1 46.9 0.5 FE1 A:CUV702 3.2 80.2 1.0 CE1 A:HIS266 3.2 67.9 1.0 CB A:CYS519 3.2 46.8 0.5 CD2 A:HIS266 3.3 65.9 1.0 SG A:CYS519 3.5 53.6 0.5 S4 A:CUV702 3.8 67.1 1.0 CB A:CYS302 3.8 61.6 1.0 CE A:LYS556 3.8 55.8 1.0 ND1 A:HIS266 4.3 68.1 1.0 CA A:CYS519 4.3 44.6 0.5 N A:CYS519 4.3 42.6 0.5 CG A:HIS266 4.3 66.0 1.0 N A:CYS519 4.3 42.6 0.5 CA A:CYS519 4.4 44.6 0.5 SG A:CYS340 4.5 67.1 1.0 SG A:CYS301 4.6 65.6 1.0 S3 A:CUV702 4.6 0.9 1.0 FE3 A:CUV702 4.8 69.0 1.0 CD A:LYS556 4.9 54.6 1.0 CA A:CYS302 5.0 63.5 1.0

Nickel binding site 2 out of 2 in 6b6y

Nickel Binding Sites List in 6b6y

Nickel binding site 2 out of 2 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced Then Oxygen-Exposed (Protein Batch 2), Oxidized C-Cluster


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced Then Oxygen-Exposed (Protein Batch 2), Oxidized C-Cluster within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni703 b:46.9 occ:0.70 NI B:CUV703 0.0 46.9 0.7 NE2 B:HIS266 2.3 68.4 1.0 SG B:CYS519 2.5 39.3 0.5 NZ B:LYS556 2.5 56.5 1.0 SG B:CYS302 2.6 53.3 1.0 FE2 B:CUV703 2.8 79.5 1.0 CB B:CYS519 3.1 46.4 0.5 CD2 B:HIS266 3.2 67.6 1.0 CE1 B:HIS266 3.2 70.2 1.0 CB B:CYS519 3.2 46.3 0.5 FE1 B:CUV703 3.3 88.8 1.0 SG B:CYS519 3.4 52.1 0.5 S4 B:CUV703 3.7 83.0 1.0 CB B:CYS302 3.8 54.6 1.0 CE B:LYS556 3.9 50.8 1.0 ND1 B:HIS266 4.3 70.0 1.0 CG B:HIS266 4.3 67.9 1.0 CA B:CYS519 4.4 45.0 0.5 N B:CYS519 4.4 45.0 0.5 N B:CYS519 4.4 44.9 0.5 CA B:CYS519 4.4 45.0 0.5 S3 B:CUV703 4.5 95.3 1.0 SG B:CYS340 4.6 67.8 1.0 SG B:CYS301 4.8 69.6 1.0 FE3 B:CUV703 4.8 73.2 1.0 CD B:LYS556 4.9 50.8 1.0

Reference: