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Nickel in PDB 6nck: Crystal Structure of H108A Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)

Enzymatic activity of Crystal Structure of H108A Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)

All present enzymatic activity of Crystal Structure of H108A Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm):
1.14.17.3; 4.3.2.5;

Protein crystallography data

The structure of Crystal Structure of H108A Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm), PDB code: 6nck was solved by M.S.Miller, S.Maheshwari, S.B.Gabelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.08 / 2.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.310, 65.880, 69.750, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 29.5

Other elements in 6nck:

The structure of Crystal Structure of H108A Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) also contains other interesting chemical elements:

Copper (Cu) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of H108A Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) (pdb code 6nck). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of H108A Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm), PDB code: 6nck:

Nickel binding site 1 out of 1 in 6nck

Go back to Nickel Binding Sites List in 6nck
Nickel binding site 1 out of 1 in the Crystal Structure of H108A Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of H108A Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni402

b:0.2
occ:1.00
O A:HOH503 3.2 37.4 1.0
OG A:SER119 3.2 56.4 1.0
CB A:SER119 4.1 51.2 1.0
OE1 A:GLU128 4.3 97.8 1.0
N A:THR120 4.5 52.0 1.0
N A:GLY121 4.7 49.5 1.0
CA A:SER119 4.7 51.5 1.0
OE2 A:GLU128 5.0 77.8 1.0

Reference:

M.S.Miller, S.Maheshwari, W.Shi, Y.Gao, N.Chu, A.S.Soares, P.A.Cole, L.M.Amzel, M.R.Fuchs, J.Jakoncic, S.B.Gabelli. Getting the Most Out of Your Crystals: Data Collection at the New High-Flux, Microfocus Mx Beamlines at Nsls-II. Molecules V. 24 2019.
ISSN: ESSN 1420-3049
PubMed: 30704096
DOI: 10.3390/MOLECULES24030496
Page generated: Wed Dec 16 01:52:48 2020

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