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Nickel in PDB, part 50 (files: 1961-2000), PDB 6lv5-6r3z

Experimental structures of coordination spheres of Nickel (Ni) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Nickel atoms. PDB files: 1961-2000 (PDB 6lv5-6r3z).
  1. 6lv5 (Ni: 2) - Ni- Carbonic Anhydrase II pH 7.8 0 Atm CO2
  2. 6lv6 (Ni: 2) - Ni- Carbonic Anhydrase II pH 7.8 20 Atm CO2
  3. 6lv7 (Ni: 2) - Ni- Carbonic Anhydrase II pH 11.0 0 Atm CO2
  4. 6lv8 (Ni: 2) - Ni- Carbonic Anhydrase II pH 11.0 20 Atm CO2
  5. 6m27 (Ni: 2) - Sirohydrochlorin Nickelochelatase Cfba in Complex with NI2+
  6. 6m2f (Ni: 1) - Sirohydrochlorin Nickelochelatase Cfba in Complex with Nickel- Sirohydrochlorin
  7. 6m2h (Ni: 2) - A Reaction Intermediate of Sirohydrochlorin Nickelochelatase Cfba in Complex with NI2+ and Sirohydrochlorin
  8. 6m7t (Ni: 1) - Human Dna Polymerase Eta in A Non-Productive Ternary Complex with CA2+ and Dttp Oppositing Cda
    Other atoms: Ca (1);
  9. 6m7u (Ni: 1) - Human Dna Polymerase Eta in A Non-Productive Ternary Complex with MG2+ and Dtmpnpp Oppositing Cda
    Other atoms: Mg (1); Cl (1);
  10. 6m7v (Ni: 1) - Human Dna Polymerase Eta Extension Complex with Cda at the -1 Position
    Other atoms: Mn (2);
  11. 6mrj (Ni: 4) - Crystal Structure of H.Pylori Nikr in Complex with Dna
    Other atoms: Mg (2);
  12. 6mvd (Ni: 1) - Crystal Structure of Lecithin:Cholesterol Acyltransferase (Lcat) in Complex with Isopropyl Dodec-11-Enylfluorophosphonate (Idfp) and A Small Molecule Activator
    Other atoms: F (12);
  13. 6mxt (Ni: 3) - Crystal Structure of Human BETA2 Adrenergic Receptor Bound to Salmeterol and NB71
    Other atoms: Mg (1);
  14. 6n3g (Ni: 2) - Crystal Structure of Histone Lysine Methyltransferase SMYD2 in Complex with Polyethylene Glycol
    Other atoms: Zn (3);
  15. 6n92 (Ni: 3) - Methylmalonyl-Coa Decarboxylase in Complex with 2-Nitronate-Propionyl- Coa
    Other atoms: K (1);
  16. 6n93 (Ni: 3) - Methylmalonyl-Coa Decarboxylase in Complex with 2-Nitronate-Propionyl- Oxa(Dethia)-Coa
    Other atoms: K (1);
  17. 6n94 (Ni: 2) - Methylmalonyl-Coa Decarboxylase in Complex with 2-Nitronate-Propionyl- Amino(Dethia)-Coa
    Other atoms: K (2);
  18. 6n95 (Ni: 2) - Methylmalonyl-Coa Decarboxylase in Complex with 2-Sulfonate-Propionyl- Coa
    Other atoms: K (2);
  19. 6n97 (Ni: 2) - Methylmalonyl-Coa Decarboxylase in Complex with 2-Sulfonate-Propionyl- Amino(Dethia)-Coa
  20. 6nck (Ni: 1) - Crystal Structure of H108A Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm)
    Other atoms: Cu (1);
  21. 6ncy (Ni: 2) - Crystal Structure of Hybrid Beta-Glucuronidase/Beta-Galacturonidase From Fusicatenibacter Saccharivorans
  22. 6nw0 (Ni: 2) - Crystal Structure Desulfovibrio Desulfuricans Nickel-Substituted Rubredoxin
  23. 6nw1 (Ni: 2) - Crystal Structure Desulfovibrio Desulfuricans Nickel-Substituted Rubredoxin V37N
  24. 6o5o (Ni: 4) - Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA02
    Other atoms: Mg (2);
  25. 6o73 (Ni: 1) - Crystal Structure of Apo CSM1-CSM4 Cassette
  26. 6obe (Ni: 2) - Ricin A Chain Bound to Vhh Antibody V6H8
  27. 6ovf (Ni: 2) - Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03
    Other atoms: Mg (3);
  28. 6ow2 (Ni: 1) - X-Ray Structure of Polypeptide Deformylase
    Other atoms: F (1);
  29. 6ow7 (Ni: 2) - X-Ray Structure of Polypeptide Deformylase with A Piperazic Acid
  30. 6p8o (Ni: 1) - Structure of P. Aeruginosa ATCC27853 HORMA2-Deltac
    Other atoms: Cl (1);
  31. 6pd1 (Ni: 1) - Pntc-Aept: Fusion Protein of Phosphonate-Specific Cytidylyltransferase and 2-Aminoethylphosphonate (Aep) Transaminase From Treponema Denticola
    Other atoms: Mg (4);
  32. 6pdj (Ni: 1) - Tyrosine-Protein Kinase Lck Bound to Compound 11
  33. 6q56 (Ni: 4) - Crystal Structure of the B. Subtilis M1A22 Trna Methyltransferase Trmk
  34. 6qdy (Ni: 2) - The Crystal Structure of Sporosarcina Pasteurii Urease in Complex with Its Substrate Urea
    Other atoms: F (1);
  35. 6qgr (Ni: 1) - The F420-Reducing [Nife] Hydrogenase Complex From Methanosarcina Barkeri at the Nia-S State
    Other atoms: Mg (1); Fe (19);
  36. 6qgt (Ni: 1) - The Carbon Monoxide Inhibition of F420-Reducing [Nife] Hydrogenase Complex From Methanosarcina Barkeri
    Other atoms: Mg (1); Fe (19);
  37. 6qii (Ni: 1) - Xenon Derivatization of the F420-Reducing [Nife] Hydrogenase Complex From Methanosarcina Barkeri
    Other atoms: Mg (1); Xe (7); Fe (19);
  38. 6qsu (Ni: 24) - Helicobacter Pylori Urease with Bme Bound in the Active Site
  39. 6qwx (Ni: 2) - Hewl Lysozyme, Crystallized From NICL2 Solution
    Other atoms: Cl (4);
  40. 6r3z (Ni: 1) - Structure of the Sbp Fpvc in Complex with NI2+ Ion From P. Aeruginosa in P212121 Space Group
Page generated: Mon Jan 25 15:57:51 2021

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