Nickel in PDB 6ovf: Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03

The structure of Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03, PDB code: 6ovf was solved by M.Chavez, D.R.Madden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.85 / 1.95
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.644, 102.644, 80.202, 90.00, 90.00, 120.00
R / Rfree (%)	17.5 / 20.7

The structure of Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03 also contains other interesting chemical elements:

Magnesium

(Mg)

3 atoms

The binding sites of Nickel atom in the Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03 (pdb code 6ovf). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03, PDB code: 6ovf:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni202 b:83.1 occ:1.00 O A:HOH330 2.0 71.9 1.0 NE2 A:HIS89 2.1 74.5 1.0 O A:HOH398 2.1 73.4 1.0 CE1 A:HIS89 2.4 69.6 1.0 CD2 A:HIS89 3.5 57.1 1.0 ND1 A:HIS89 3.8 68.6 1.0 O A:GLY87 4.1 55.1 1.0 CG A:HIS89 4.3 64.3 1.0 C A:GLY87 5.0 54.0 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni203 b:24.2 occ:1.00 OE1 A:GLU141 2.1 24.0 1.0 NE2 A:HIS144 2.1 23.1 1.0 O A:HOH311 2.2 23.7 1.0 CD A:GLU141 3.0 25.4 1.0 CD2 A:HIS144 3.1 19.9 1.0 CE1 A:HIS144 3.1 23.9 1.0 OE2 A:GLU141 3.3 27.8 1.0 O A:HOH316 3.8 29.3 1.0 ND1 A:HIS144 4.2 19.0 1.0 CG A:HIS144 4.2 17.3 1.0 N A:ALA63 4.3 19.6 1.0 CG A:GLU141 4.4 24.3 1.0 N A:GLY142 4.5 24.1 1.0 O A:PRO61 4.5 21.9 1.0 CB A:ALA63 4.6 21.4 1.0 CA A:ASP62 4.8 24.6 1.0 CA A:GLU141 4.8 27.8 1.0 C A:ASP62 4.9 21.6 1.0 CA A:ALA63 5.0 23.0 1.0 O A:HOH303 5.0 26.5 1.0

M.Chavez, D.R.Madden. Crystal Structure of the Disabled-2 (DAB2) Dab Homology Domain in Complex with Peptide STA03 To Be Published.