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Nickel in PDB 6wv2: Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of A Prokaryotic Collagen and Elucidation of Catalytic Mechanism

Enzymatic activity of Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of A Prokaryotic Collagen and Elucidation of Catalytic Mechanism

All present enzymatic activity of Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of A Prokaryotic Collagen and Elucidation of Catalytic Mechanism:
4.2.2.1;

Protein crystallography data

The structure of Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of A Prokaryotic Collagen and Elucidation of Catalytic Mechanism, PDB code: 6wv2 was solved by C.Deivanayagam, N.Schormann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.61 / 2.21
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.451, 86.789, 168.152, 90, 90, 90
R / Rfree (%) 21.3 / 23.7

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of A Prokaryotic Collagen and Elucidation of Catalytic Mechanism (pdb code 6wv2). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of A Prokaryotic Collagen and Elucidation of Catalytic Mechanism, PDB code: 6wv2:

Nickel binding site 1 out of 1 in 6wv2

Go back to Nickel Binding Sites List in 6wv2
Nickel binding site 1 out of 1 in the Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of A Prokaryotic Collagen and Elucidation of Catalytic Mechanism


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of A Prokaryotic Collagen and Elucidation of Catalytic Mechanism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni401

b:65.8
occ:1.00
 NE2 B:HIS377 2.2 101.3 1.0
NE2 A:HIS377 2.2 77.2 1.0
NE2 A:HIS375 2.3 65.9 1.0
NE2 C:HIS377 2.3 95.8 1.0
NE2 B:HIS375 2.4 73.2 1.0
CE1 C:HIS375 2.6 89.0 1.0
ND1 C:HIS375 2.6 88.5 1.0
CD2 A:HIS377 2.9 78.2 1.0
CE1 C:HIS377 3.0 93.9 1.0
CE1 B:HIS377 3.1 101.2 1.0
CD2 B:HIS377 3.1 101.8 1.0
CD2 A:HIS375 3.2 66.8 1.0
CE1 A:HIS377 3.2 77.7 1.0
CE1 B:HIS375 3.3 72.5 1.0
CD2 B:HIS375 3.3 72.3 1.0
CE1 A:HIS375 3.3 64.7 1.0
CD2 C:HIS377 3.5 97.5 1.0
NE2 C:HIS375 3.8 92.6 1.0
CG C:HIS375 3.9 88.6 1.0
CG A:HIS377 4.1 78.5 1.0
ND1 A:HIS377 4.2 78.8 1.0
ND1 B:HIS377 4.2 100.9 1.0
ND1 C:HIS377 4.2 95.6 1.0
CG B:HIS377 4.3 100.9 1.0
CG A:HIS375 4.4 67.2 1.0
ND1 A:HIS375 4.4 66.0 1.0
ND1 B:HIS375 4.4 72.7 1.0
CG B:HIS375 4.5 73.0 1.0
CD2 C:HIS375 4.5 90.2 1.0
CG C:HIS377 4.5 98.1 1.0
CB C:HIS375 4.8 86.8 1.0

Reference:

J.H.Lee, N.Schormann, K.R.Rajashankar, C.Deivanaygam. Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of A Prokaryotic Collagen and Elucidation of Catalytic Mechanism To Be Published.
Page generated: Mon Jul 12 16:09:43 2021

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