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Nickel in PDB, part 52 (files: 2041-2080), PDB 6vwy-6z9o

Experimental structures of coordination spheres of Nickel (Ni) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Nickel atoms. PDB files: 2041-2080 (PDB 6vwy-6z9o).
  1. 6vwy (Ni: 4) - Crystal Structure of C45G/T50C D. Vulgaris Carbon Monoxide Dehydrogenase (Anaerobic)
    Other atoms: Fe (28);
  2. 6vwz (Ni: 2) - Crystal Structure of Air-Exposed C45G/T50C D. Vulgaris Carbon Monoxide Dehydrogenase (20 Minute Air Exposure)
    Other atoms: Fe (20);
  3. 6vx0 (Ni: 2) - Crystal Structure of Air-Exposed C45G/T50C D. Vulgaris Carbon Monoxide Dehydrogenase (2 Hour Air Exposure)
    Other atoms: Fe (16);
  4. 6vx1 (Ni: 2) - Crystal Structure of Air-Exposed C45G/T50C D. Vulgaris Carbon Monoxide Dehydrogenase (2 Day Air Exposure)
    Other atoms: Fe (16);
  5. 6w1g (Ni: 1) - Crystal Structure of the Hydroxyglutarate Synthase From Pseudomonas Putida
  6. 6w1h (Ni: 1) - Crystal Structure of the Hydroxyglutarate Synthase in Complex with 2- Oxoadipate From Pseudomonas Putida
  7. 6w1k (Ni: 4) - Crystal Structure of the Hydroxyglutarate Synthase in Complex with 2- Oxoadipate From Oryza Sativa
  8. 6wgq (Ni: 5) - The Crystal Structure of A Beta-Lactamase From Shigella Flexneri 2A Str. 2457T
    Other atoms: Cl (4);
  9. 6wza (Ni: 1) - Ni-Bound Structure of An Engineered Metal-Dependent Protein Trimer, TRICYT1
    Other atoms: Fe (3); Cl (6); Na (5);
  10. 6wzc (Ni: 2) - Ni-Bound Structure of An Engineered Protein Trimer, TRICYT3
    Other atoms: Fe (1); Ca (4); Cl (3);
  11. 6x1h (Ni: 1) - Crystal Structure of A Guanine Nucleotide Exchange Factor (Gef) Domain From the Orientia Tsutsugamushi Protein Otdub
  12. 6x5e (Ni: 3) - Crystal Structure of A Lewis-Binding Fab (CH88.2)
  13. 6x5k (Ni: 12) - Crystal Structure of Codh/Acs with Carbon Monoxide Bound to the A- Cluster
    Other atoms: Mg (1); Fe (56);
  14. 6xnw (Ni: 2) - Crystal Structure of V39A Mutant of Human CEACAM1
  15. 6xte (Ni: 2) - Human Karyopherin RANBP5 (Isoform-1)
    Other atoms: Cl (1);
  16. 6xu2 (Ni: 1) - Human Karyopherin RANBP5 (Isoform-3)
  17. 6xvw (Ni: 6) - Catalytic Domain of Human Parp-1 in Complex with the Inhibitor MC2050
  18. 6xx4 (Ni: 1) - Crystal Structure of the C-Src SH3 Domain H122R-Q128E Mutant in Complex with Ni(II) at pH 7.5 Co-Crystallized with Methyl Beta- Cyclodextrin
  19. 6xx5 (Ni: 1) - Crystal Structure of the C-Src SH3 Domain H122R-Q128K Mutant in Complex with Ni(II) at pH 7.5 Co-Crystallized with Methyl Beta- Cyclodextrin
  20. 6y6s (Ni: 1) - Mouse Galactocerebrosidase Complexed with Galacto-Noeurostegine Gns at pH 6.8
    Other atoms: Ca (1);
  21. 6y6t (Ni: 1) - Mouse Galactocerebrosidase Complexed with Galacto-Noeurostegine Gns at pH 4.6
    Other atoms: Ca (1);
  22. 6y8y (Ni: 1) - Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5) with Bound Glucose-1-Phosphate
    Other atoms: Ca (1); Na (5);
  23. 6y8z (Ni: 1) - Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5)
    Other atoms: Ca (1); Na (4);
  24. 6y9u (Ni: 6) - Crystal Structure of Pnra From S. Pneumoniae in Complex with Adenosine
  25. 6ya3 (Ni: 8) - Crystal Structure of Pnra From S. Pneumoniae in Complex with Guanosine
  26. 6ya4 (Ni: 7) - Crystal Structure of Pnra From S. Pneumoniae in Complex with Cytidine
  27. 6yag (Ni: 7) - Crystal Structure of Pnra From S. Pneumoniae in Complex with Thymidine
  28. 6yjd (Ni: 2) - Lamin A COIL2 Dimer Stabilized By N-Terminal Capping
    Other atoms: Cl (1);
  29. 6yn7 (Ni: 2) - Crystal Structure of Ahe Enzyme From Alicyclobacillus Herbarius
  30. 6yoa (Ni: 1) - Lig V 1 Structure and the Inflammatory Response to the Ole E 1 Protein Family
  31. 6ytt (Ni: 6) - Co-Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) From Clostridium Autoethanogenum at 3.0-A Resolution
    Other atoms: F (9); Fe (28); Na (6);
  32. 6yu9 (Ni: 4) - Co-Dehydrogenase Homodimer From Clostridium Autoethanogenum at 1.90-A Resolution
    Other atoms: Fe (40); Cl (1);
  33. 6yua (Ni: 2) - Co-Dehydrogenase Coupled to the N-Terminal Domain of the Acetyl-Coa Synthase From Clostridium Autoethanogenum Isolated After Tryptic Digestion.
    Other atoms: Mg (4); Fe (20);
  34. 6z7r (Ni: 2) - Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1
    Other atoms: Kr (42); Fe (36); Cl (2);
  35. 6z81 (Ni: 4) - Tsabd Bound to the Inhibitor
    Other atoms: Zn (2); Na (3);
  36. 6z8j (Ni: 2) - Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure WTO2
    Other atoms: Fe (36); Cl (2);
  37. 6z8m (Ni: 2) - Structure of [Nifese] Hydrogenase G491S Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491S- O2
    Other atoms: Fe (18); Cl (1);
  38. 6z8o (Ni: 2) - Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr
    Other atoms: Kr (20); Fe (36); Cl (2);
  39. 6z9g (Ni: 4) - Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2
    Other atoms: Fe (72); Cl (4);
  40. 6z9o (Ni: 1) - Structure of [Nifese] Hydrogenase G491S Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Ld
    Other atoms: Fe (18);
Page generated: Sat Apr 3 18:00:02 2021

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