Atomistry » Nickel » PDB 6wgq-9ant » 6wzc
Atomistry »
  Nickel »
    PDB 6wgq-9ant »
      6wzc »

Nickel in PDB 6wzc: Ni-Bound Structure of An Engineered Protein Trimer, TRICYT3

Protein crystallography data

The structure of Ni-Bound Structure of An Engineered Protein Trimer, TRICYT3, PDB code: 6wzc was solved by F.A.Tezcan, A.Kakkis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.71 / 2.20
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 82.460, 82.460, 53.118, 90.00, 90.00, 120.00
R / Rfree (%) 18.1 / 21.9

Other elements in 6wzc:

The structure of Ni-Bound Structure of An Engineered Protein Trimer, TRICYT3 also contains other interesting chemical elements:

Iron (Fe) 1 atom
Calcium (Ca) 4 atoms
Chlorine (Cl) 3 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Ni-Bound Structure of An Engineered Protein Trimer, TRICYT3 (pdb code 6wzc). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Ni-Bound Structure of An Engineered Protein Trimer, TRICYT3, PDB code: 6wzc:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 6wzc

Go back to Nickel Binding Sites List in 6wzc
Nickel binding site 1 out of 2 in the Ni-Bound Structure of An Engineered Protein Trimer, TRICYT3


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Ni-Bound Structure of An Engineered Protein Trimer, TRICYT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni202

b:35.0
occ:1.00
N A:ALA1 2.0 26.6 1.0
O A:HOH361 2.1 33.3 1.0
O A:ALA1 2.1 30.9 1.0
O A:HOH320 2.2 32.0 1.0
O A:HOH360 2.2 43.7 1.0
OD2 A:ASP39 2.2 27.0 1.0
C A:ALA1 2.8 28.6 1.0
CA A:ALA1 2.9 25.6 1.0
CG A:ASP39 3.0 22.4 1.0
OD1 A:ASP39 3.1 27.3 1.0
CB A:ALA1 3.9 27.1 1.0
O A:HOH350 4.0 30.5 1.0
N A:ASP2 4.1 27.5 1.0
O A:HOH381 4.1 52.5 1.0
ND2 A:ASN6 4.2 23.2 1.0
O A:HOH391 4.4 38.2 1.0
CB A:ASP39 4.4 20.2 1.0
O A:ASP39 4.6 22.3 1.0
CA A:ASP2 4.7 26.4 1.0

Nickel binding site 2 out of 2 in 6wzc

Go back to Nickel Binding Sites List in 6wzc
Nickel binding site 2 out of 2 in the Ni-Bound Structure of An Engineered Protein Trimer, TRICYT3


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Ni-Bound Structure of An Engineered Protein Trimer, TRICYT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni203

b:20.9
occ:0.33
NE2 A:HIS73 2.1 27.2 1.0
NE2 A:HIS77 2.2 50.1 1.0
CE1 A:HIS73 2.8 41.5 1.0
CE1 A:HIS77 3.1 40.1 1.0
CD2 A:HIS73 3.3 21.6 1.0
CD2 A:HIS77 3.3 40.7 1.0
ND1 A:HIS73 4.0 34.8 1.0
ND1 A:HIS77 4.3 53.8 1.0
CG A:HIS73 4.3 27.1 1.0
CG A:HIS77 4.4 53.1 1.0

Reference:

F.A.Tezcan, A.Kakkis, D.Gagnon, J.Esselborn, R.D.Britt. Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites. Angew.Chem.Int.Ed.Engl. 2020.
ISSN: ESSN 1521-3773
PubMed: 32830423
DOI: 10.1002/ANIE.202009226
Page generated: Wed Dec 16 01:57:05 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy