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Nickel in PDB 6wxa: Crystal Structure of Truncated Streptococcal Bacteriophage Hyaluronidase Complexed with Unsaturated Hyaluronan Hexa-Saccharides

Enzymatic activity of Crystal Structure of Truncated Streptococcal Bacteriophage Hyaluronidase Complexed with Unsaturated Hyaluronan Hexa-Saccharides

All present enzymatic activity of Crystal Structure of Truncated Streptococcal Bacteriophage Hyaluronidase Complexed with Unsaturated Hyaluronan Hexa-Saccharides:
4.2.2.1;

Protein crystallography data

The structure of Crystal Structure of Truncated Streptococcal Bacteriophage Hyaluronidase Complexed with Unsaturated Hyaluronan Hexa-Saccharides, PDB code: 6wxa was solved by C.Deivanayagam, N.Schormann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.91 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.296, 86.492, 168.226, 90, 90, 90
R / Rfree (%) 21 / 24.3

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Truncated Streptococcal Bacteriophage Hyaluronidase Complexed with Unsaturated Hyaluronan Hexa-Saccharides (pdb code 6wxa). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Truncated Streptococcal Bacteriophage Hyaluronidase Complexed with Unsaturated Hyaluronan Hexa-Saccharides, PDB code: 6wxa:

Nickel binding site 1 out of 1 in 6wxa

Go back to Nickel Binding Sites List in 6wxa
Nickel binding site 1 out of 1 in the Crystal Structure of Truncated Streptococcal Bacteriophage Hyaluronidase Complexed with Unsaturated Hyaluronan Hexa-Saccharides


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Truncated Streptococcal Bacteriophage Hyaluronidase Complexed with Unsaturated Hyaluronan Hexa-Saccharides within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni406

b:80.4
occ:1.00
 NE2 C:HIS375 2.2 89.2 1.0
NE2 A:HIS375 2.3 81.8 1.0
NE2 A:HIS377 2.3 104.9 1.0
NE2 B:HIS375 2.3 84.1 1.0
NE2 B:HIS377 2.3 91.9 1.0
NE2 C:HIS377 2.3 101.5 1.0
CE1 A:HIS377 2.6 103.9 1.0
CE1 C:HIS375 3.0 83.2 1.0
CE1 A:HIS375 3.2 77.6 1.0
CD2 B:HIS375 3.2 79.5 1.0
CE1 C:HIS377 3.2 97.2 1.0
CD2 B:HIS377 3.3 89.7 1.0
CE1 B:HIS377 3.3 90.1 1.0
CE1 B:HIS375 3.3 80.5 1.0
CD2 A:HIS375 3.3 82.3 1.0
CD2 C:HIS377 3.3 100.7 1.0
CD2 C:HIS375 3.3 87.7 1.0
CD2 A:HIS377 3.6 107.0 1.0
ND1 A:HIS377 3.9 105.8 1.0
ND1 C:HIS375 4.2 82.0 1.0
ND1 C:HIS377 4.3 97.7 1.0
ND1 B:HIS375 4.4 79.3 1.0
ND1 A:HIS375 4.4 82.6 1.0
ND1 B:HIS377 4.4 89.9 1.0
CG B:HIS375 4.4 80.0 1.0
CG C:HIS375 4.4 87.8 1.0
CG C:HIS377 4.4 99.8 1.0
CG B:HIS377 4.4 91.5 1.0
CG A:HIS377 4.4 109.1 1.0
CG A:HIS375 4.4 84.3 1.0

Reference:

J.H.Lee, N.Schormann, K.R.Rajashankar, C.Deivanaygam. Crystal Structure of Streptococcal Bacteriophage Hyaluronidase: Presence of A Prokaryotic Collagen and Elucidation of Catalytic Mechanism To Be Published.
Page generated: Mon Aug 18 21:36:46 2025

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