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Nickel in PDB 6x1h: Crystal Structure of A Guanine Nucleotide Exchange Factor (Gef) Domain From the Orientia Tsutsugamushi Protein Otdub

Protein crystallography data

The structure of Crystal Structure of A Guanine Nucleotide Exchange Factor (Gef) Domain From the Orientia Tsutsugamushi Protein Otdub, PDB code: 6x1h was solved by C.S.Lim, Y.Xiong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.86 / 2.91
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 110.533, 110.533, 251.240, 90.00, 90.00, 120.00
R / Rfree (%) 16.6 / 20.8

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of A Guanine Nucleotide Exchange Factor (Gef) Domain From the Orientia Tsutsugamushi Protein Otdub (pdb code 6x1h). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of A Guanine Nucleotide Exchange Factor (Gef) Domain From the Orientia Tsutsugamushi Protein Otdub, PDB code: 6x1h:

Nickel binding site 1 out of 1 in 6x1h

Go back to Nickel Binding Sites List in 6x1h
Nickel binding site 1 out of 1 in the Crystal Structure of A Guanine Nucleotide Exchange Factor (Gef) Domain From the Orientia Tsutsugamushi Protein Otdub


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of A Guanine Nucleotide Exchange Factor (Gef) Domain From the Orientia Tsutsugamushi Protein Otdub within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ni801

b:87.7
occ:0.33
NE2 D:HIS760 2.4 0.7 1.0
O D:HOH901 2.4 51.8 1.0
CE1 D:HIS760 3.2 0.6 1.0
CD2 D:HIS760 3.3 0.9 1.0
ND1 D:HIS760 4.3 0.0 1.0
CG D:HIS760 4.4 0.8 1.0

Reference:

C.Lim, J.M.Berk, A.Blaise, J.Bircher, A.J.Koleske, M.Hochstrasser, Y.Xiong. Crystal Structure of A Guanine Nucleotide Exchange Factor Encoded By the Scrub Typhus Pathogen Orientia Tsutsugamushi . Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
PubMed: 33184172
DOI: 10.1073/PNAS.2018163117
Page generated: Wed Dec 16 01:57:15 2020

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