Nickel in PDB 6xa0: Crystal Structure of C-As Lyase with Mutation K105R with Ni(II)

The structure of Crystal Structure of C-As Lyase with Mutation K105R with Ni(II), PDB code: 6xa0 was solved by S.Venkadesh, M.Yoshinaga, P.Kandavelu, B.Sankaran, B.P.Rosen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.94 / 2.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.077, 43.167, 118.944, 90, 90, 90
R / Rfree (%)	19.4 / 26.8

The binding sites of Nickel atom in the Crystal Structure of C-As Lyase with Mutation K105R with Ni(II) (pdb code 6xa0). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of C-As Lyase with Mutation K105R with Ni(II), PDB code: 6xa0:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of C-As Lyase with Mutation K105R with Ni(II)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of C-As Lyase with Mutation K105R with Ni(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni201 b:58.8 occ:1.00 OE1 A:GLU117 2.2 28.8 1.0 O A:HOH337 2.4 26.7 1.0 NE2 A:HIS65 2.5 16.6 1.0 O A:HOH347 2.7 33.2 1.0 O A:HOH356 2.7 25.9 1.0 OE1 A:GLN8 2.8 28.2 1.0 NE2 A:GLN8 2.9 24.1 1.0 CD A:GLN8 3.2 22.6 1.0 CE1 A:HIS65 3.3 11.4 1.0 CD A:GLU117 3.3 20.7 1.0 O A:HOH350 3.6 42.6 1.0 CD2 A:HIS65 3.6 9.4 1.0 OE2 A:GLU117 3.9 23.7 1.0 O A:HOH357 4.2 29.6 1.0 O A:HOH360 4.3 35.3 1.0 CG A:GLU117 4.5 17.6 1.0 ND1 A:HIS65 4.5 13.0 1.0 CG A:GLN8 4.6 8.6 1.0 CG A:HIS65 4.7 10.8 1.0 O A:HOH352 4.9 33.9 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of C-As Lyase with Mutation K105R with Ni(II)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of C-As Lyase with Mutation K105R with Ni(II) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni201 b:59.0 occ:1.00 NE2 B:HIS65 2.3 19.6 1.0 OE1 B:GLN8 2.5 33.9 1.0 O B:HOH307 2.6 23.9 1.0 OE2 B:GLU117 3.0 41.9 1.0 NE2 B:GLN8 3.0 31.1 1.0 CD B:GLN8 3.0 25.7 1.0 CE1 B:HIS65 3.1 8.8 1.0 O B:HOH335 3.4 28.7 1.0 CD2 B:HIS65 3.5 15.5 1.0 CD B:GLU117 4.1 51.7 1.0 ND1 B:HIS65 4.3 17.8 1.0 CG B:GLN8 4.4 14.8 1.0 CG B:HIS65 4.5 13.0 1.0 CG2 B:VAL51 4.8 11.0 1.0 OE1 B:GLU117 4.9 50.6 1.0 CB B:ALA10 5.0 5.7 1.0 CG B:GLU117 5.0 34.4 1.0

S.Venkadesh, M.Yoshinaga, P.Kandavelu, B.Sankaran, B.P.Rosen. Crystal Structure of C-As Lyase with Mutation K105R with Ni(II) To Be Published.