Nickel in PDB 6yoa: Lig V 1 Structure and the Inflammatory Response to the Ole E 1 Protein Family

The structure of Lig V 1 Structure and the Inflammatory Response to the Ole E 1 Protein Family, PDB code: 6yoa was solved by T.Robledo-Retana, J.Bradley-Clark, T.Croll, R.Rose, A.Stagg, M.Villalba, R.Pickersgill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.10 / 2.83
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	76.484, 76.484, 113.498, 90.00, 90.00, 120.00
R / Rfree (%)	26.2 / 31.9

The binding sites of Nickel atom in the Lig V 1 Structure and the Inflammatory Response to the Ole E 1 Protein Family (pdb code 6yoa). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Lig V 1 Structure and the Inflammatory Response to the Ole E 1 Protein Family, PDB code: 6yoa:

Nickel binding site 1 out of 1 in the Lig V 1 Structure and the Inflammatory Response to the Ole E 1 Protein Family


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Lig V 1 Structure and the Inflammatory Response to the Ole E 1 Protein Family within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni200 b:91.5 occ:1.00 NE2 B:HIS73 1.8 0.1 1.0 OE1 B:GLU70 2.4 0.9 1.0 CE1 B:HIS73 2.5 0.8 1.0 CD2 B:HIS73 2.9 0.5 1.0 OD1 B:ASP72 3.0 0.4 1.0 OD2 B:ASP72 3.3 0.7 1.0 CD B:GLU70 3.5 0.1 1.0 CG B:ASP72 3.6 0.1 1.0 ND1 B:HIS73 3.6 0.7 1.0 CG B:HIS73 3.8 0.8 1.0 CG B:GLU70 4.2 0.9 1.0 OE2 B:GLU70 4.4 1.0 1.0 CB B:PHE53 4.7 1.0 1.0 CG B:PHE53 4.9 1.0 1.0

T.Robledo Retana, J.Bradley-Clarke, T.Croll, R.Rose, A.J.Stagg, M.Villalba, I.Honti, R.W.Pickersgill. Lig V 1 Structure and the Inflammatory Response to the Ole E 1 Protein Family. Allergy 2020.
ISSN: ESSN 1398-9995
PubMed: 32359174
DOI: 10.1111/ALL.14351