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Nickel in PDB 6xu2: Human Karyopherin RANBP5 (Isoform-3)

Protein crystallography data

The structure of Human Karyopherin RANBP5 (Isoform-3), PDB code: 6xu2 was solved by C.Swale, A.A.Mccarthy, I.Berger, C.Bieniossek, B.Delmas, R.W.H.Ruigrok, T.Crepin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 96.43 / 2.83
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 97.097, 126.248, 149.419, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 24.4

Nickel Binding Sites:

The binding sites of Nickel atom in the Human Karyopherin RANBP5 (Isoform-3) (pdb code 6xu2). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Human Karyopherin RANBP5 (Isoform-3), PDB code: 6xu2:

Nickel binding site 1 out of 1 in 6xu2

Go back to Nickel Binding Sites List in 6xu2
Nickel binding site 1 out of 1 in the Human Karyopherin RANBP5 (Isoform-3)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Human Karyopherin RANBP5 (Isoform-3) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1201

b:0.9
occ:1.00
ND1 A:HIS765 3.3 0.8 1.0
OD1 A:ASN804 4.0 0.1 1.0
CE1 A:HIS765 4.1 0.7 1.0
CG A:HIS765 4.4 0.8 1.0
ND2 A:ASN804 4.5 0.3 1.0
CG A:ASN804 4.5 0.9 1.0
CA A:HIS765 4.5 0.6 1.0
CB A:HIS765 4.7 0.2 1.0
CE1 A:HIS807 4.8 0.6 1.0
ND1 A:HIS807 5.0 0.1 1.0

Reference:

C.Swale, B.Da Costa, L.Sedano, F.Garzoni, A.A.Mccarthy, I.Berger, C.Bieniossek, R.W.H.Ruigrok, B.Delmas, T.Crepin. X-Ray Structure of the Human Karyopherin RANBP5, An Essential Factor For Influenza Polymerase Nuclear Trafficking. J.Mol.Biol. 2020.
ISSN: ESSN 1089-8638
PubMed: 32222384
DOI: 10.1016/J.JMB.2020.03.021
Page generated: Wed Dec 16 01:57:08 2020

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