Nickel in PDB 6z9o: Structure of [Nifese] Hydrogenase G491S Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Ld

Enzymatic activity of Structure of [Nifese] Hydrogenase G491S Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Ld

Protein crystallography data

Other elements in 6z9o:

Nickel Binding Sites:

Nickel binding site 1 out of 1 in 6z9o

Nickel Binding Sites List in 6z9o

Nickel binding site 1 out of 1 in the Structure of [Nifese] Hydrogenase G491S Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Ld


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of [Nifese] Hydrogenase G491S Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Ld within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni502 b:28.7 occ:0.89 S B:H2S504 2.0 24.9 1.0 SG B:CYS492 2.3 18.4 1.0 SE B:SEC489 2.3 31.1 0.5 SG B:CSD75 2.3 23.8 0.6 SG B:CSD75 2.4 22.5 0.5 SG B:CYS78 2.4 18.8 1.0 SE B:SEC489 2.4 23.2 0.3 FE B:FCO501 2.4 20.5 1.0 HB2 B:CSD75 3.0 23.7 0.6 CB B:CSD75 3.1 19.7 0.6 CB B:CSD75 3.1 19.7 0.5 HB3 B:CSD75 3.1 23.7 0.6 OD2 B:CSD75 3.1 24.1 0.5 HB2 B:SEC489 3.2 28.1 0.2 SE B:SEC489 3.2 26.1 0.2 C1 B:FCO501 3.3 20.9 1.0 OD1 B:CSD75 3.3 21.9 0.5 HB2 B:CYS492 3.4 25.4 1.0 HB2 B:SEC489 3.4 28.4 0.5 HB3 B:CYS78 3.5 22.4 1.0 C2 B:FCO501 3.5 19.8 1.0 CB B:SEC489 3.5 23.6 0.5 CB B:CYS492 3.5 21.1 1.0 CB B:SEC489 3.5 23.4 0.2 H B:CYS78 3.6 20.2 1.0 CB B:CYS78 3.6 18.6 1.0 HB3 B:SEC489 3.6 28.5 0.3 HB3 B:SEC489 3.7 28.1 0.2 CB B:SEC489 3.8 23.7 0.3 HB3 B:SEC489 3.8 28.4 0.5 HB B:VAL77 4.0 22.2 1.0 HD2 B:ARG422 4.0 21.3 1.0 H B:CYS492 4.0 21.7 1.0 C3 B:FCO501 4.1 19.3 1.0 HB3 B:CYS492 4.1 25.4 1.0 N B:CYS78 4.2 16.8 1.0 HE2 B:HIS82 4.2 21.8 1.0 N1 B:FCO501 4.2 20.4 1.0 HB2 B:SEC489 4.3 28.5 0.3 HB2 B:CYS78 4.3 22.4 1.0 N2 B:FCO501 4.4 16.7 1.0 CA B:CYS78 4.5 16.2 1.0 N B:CYS492 4.5 18.1 1.0 CA B:CYS492 4.5 19.1 1.0 CA B:CSD75 4.5 18.8 0.6 CA B:CSD75 4.5 18.8 0.5 HH11 B:ARG422 4.6 20.8 1.0 H B:VAL77 4.6 20.1 1.0 HA B:CYS492 4.7 23.0 1.0 O B:SEC489 4.7 21.1 0.3 CD B:ARG422 4.8 17.7 1.0 HD3 B:ARG422 4.8 21.3 1.0 HA B:CSD75 4.8 22.6 0.6 CA B:SEC489 4.9 21.6 0.5 HB3 B:ALA491 4.9 21.5 1.0 CB B:VAL77 4.9 18.5 1.0 NE2 B:HIS82 4.9 18.1 1.0 HD2 B:HIS82 4.9 19.7 1.0 CA B:SEC489 5.0 21.6 0.2 NH1 B:ARG422 5.0 17.3 1.0 C B:CSD75 5.0 19.7 0.5 HG22 B:ILE74 5.0 21.5 1.0

Reference: