Nickel in PDB 6za1: Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd

Enzymatic activity of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd

Protein crystallography data

Other elements in 6za1:

Nickel Binding Sites:

Nickel binding site 1 out of 1 in 6za1

Nickel Binding Sites List in 6za1

Nickel binding site 1 out of 1 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni502 b:24.3 occ:0.79 S B:H2S504 2.0 25.1 1.0 SG B:CYS492 2.2 16.7 1.0 SE B:SEC489 2.3 25.4 0.4 SG B:CSD75 2.3 21.4 0.4 SG B:CYS78 2.3 17.6 1.0 SG B:CSD75 2.3 22.0 0.6 SE B:SEC489 2.4 18.1 0.2 FE B:FCO501 2.4 18.3 1.0 HB2 B:SEC489 3.0 24.0 0.2 SE B:SEC489 3.0 26.4 0.2 OD2 B:CSD75 3.0 24.2 0.4 HB2 B:CSD75 3.1 22.1 0.6 CB B:CSD75 3.1 18.4 0.6 HB3 B:CSD75 3.2 22.1 0.6 CB B:CSD75 3.2 17.9 0.4 HB2 B:SEC489 3.2 23.9 0.2 OD1 B:CSD75 3.2 21.0 0.4 SE B:SEC489 3.3 29.1 0.2 C1 B:FCO501 3.3 19.7 1.0 HB2 B:CYS492 3.4 19.0 1.0 HB3 B:CYS78 3.4 18.4 1.0 CB B:SEC489 3.5 20.0 0.2 HB2 B:SEC489 3.5 24.2 0.4 C2 B:FCO501 3.5 17.2 1.0 CB B:CYS492 3.5 15.8 1.0 CB B:SEC489 3.5 19.9 0.2 H B:CYS78 3.5 19.5 1.0 CB B:SEC489 3.5 20.1 0.4 CB B:CYS78 3.6 15.3 1.0 HB3 B:SEC489 3.6 23.9 0.2 HB3 B:SEC489 3.7 23.9 0.2 CB B:SEC489 3.7 19.9 0.2 HB3 B:SEC489 3.8 24.0 0.2 HD2 B:ARG422 3.9 20.1 1.0 HB3 B:SEC489 3.9 24.2 0.4 H B:CYS492 3.9 18.2 1.0 HB B:VAL77 3.9 19.4 1.0 C3 B:FCO501 4.1 20.6 1.0 N B:CYS78 4.1 16.2 1.0 HB3 B:CYS492 4.1 19.0 1.0 HE2 B:HIS82 4.2 20.6 1.0 N1 B:FCO501 4.2 19.4 1.0 HB2 B:SEC489 4.3 23.9 0.2 HB2 B:CYS78 4.3 18.4 1.0 CA B:CYS78 4.4 14.5 1.0 N B:CYS492 4.5 15.2 1.0 N2 B:FCO501 4.5 16.6 1.0 CA B:CYS492 4.5 14.9 1.0 HH11 B:ARG422 4.5 20.9 1.0 CA B:CSD75 4.6 16.8 0.4 CA B:CSD75 4.6 16.8 0.6 H B:VAL77 4.6 17.5 1.0 HA B:CYS492 4.7 17.9 1.0 CD B:ARG422 4.7 16.7 1.0 O B:SEC489 4.7 18.3 0.2 HB3 B:ALA491 4.8 20.5 1.0 HD3 B:ARG422 4.8 20.1 1.0 CA B:SEC489 4.8 18.8 0.2 CA B:SEC489 4.8 18.8 0.4 HD2 B:HIS82 4.9 20.3 1.0 CB B:VAL77 4.9 16.1 1.0 HA B:CSD75 4.9 20.2 0.6 NE2 B:HIS82 4.9 17.1 1.0 O B:CSD75 4.9 15.2 0.4 NH1 B:ARG422 4.9 17.4 1.0 C B:CSD75 4.9 16.4 0.4 HG3 B:GLU28 4.9 25.7 1.0 CA B:SEC489 5.0 18.8 0.2 CA B:SEC489 5.0 18.8 0.2 HG22 B:ILE74 5.0 18.8 1.0

Reference: