Nickel in PDB 7afs: The Structure of Artemis Variant D37A

The structure of The Structure of Artemis Variant D37A, PDB code: 7afs was solved by Y.Yosaatmadja, S.Goubin, J.A.Newman, S.M.M.Mukhopadhyay, A.A.Dannerfjord, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.66 / 1.70
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	35.909, 48.062, 48.207, 82.89, 76.43, 86.38
R / Rfree (%)	18.6 / 21.6

The structure of The Structure of Artemis Variant D37A also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Nickel atom in the The Structure of Artemis Variant D37A (pdb code 7afs). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the The Structure of Artemis Variant D37A, PDB code: 7afs:

Nickel binding site 1 out of 1 in the The Structure of Artemis Variant D37A


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Structure of Artemis Variant D37A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni401 b:20.0 occ:1.00 O A:HOH545 2.0 18.3 1.0 OD2 A:ASP136 2.1 19.6 1.0 O A:HOH606 2.2 21.6 1.0 NE2 A:HIS115 2.2 19.8 1.0 ND1 A:HIS35 2.2 22.1 1.0 NE2 A:HIS33 2.3 19.5 1.0 CE1 A:HIS115 3.1 20.1 1.0 CE1 A:HIS35 3.1 21.9 1.0 CD2 A:HIS33 3.1 18.5 1.0 CG A:ASP136 3.2 19.1 1.0 CD2 A:HIS115 3.2 19.8 1.0 CG A:HIS35 3.2 20.8 1.0 CE1 A:HIS33 3.3 19.0 1.0 CB A:HIS35 3.6 20.5 1.0 CB A:ASP136 3.6 19.0 1.0 CD2 A:HIS38 4.1 22.0 1.0 NE2 A:HIS38 4.1 25.0 1.0 ND1 A:HIS115 4.2 19.4 1.0 NE2 A:HIS35 4.2 21.5 1.0 O A:HOH651 4.2 36.8 1.0 CG A:HIS115 4.3 19.5 1.0 CG A:HIS33 4.3 17.8 1.0 CD2 A:HIS35 4.3 21.7 1.0 OD1 A:ASP136 4.3 19.5 1.0 ND1 A:HIS33 4.3 18.5 1.0 CE1 A:HIS319 4.9 20.2 1.0

Y.Yosaatmadja, S.Goubin, J.A.Newman, S.M.M.Mukhopadhyay, A.A.Dannerfjord, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, O.Gileadi. The Structure of Artemis/SNM1C/DCLRE1C with 2 Zinc Ions To Be Published.