Atomistry » Nickel » PDB 6wgq-9ant » 7afs
Atomistry »
  Nickel »
    PDB 6wgq-9ant »
      7afs »

Nickel in PDB 7afs: The Structure of Artemis Variant D37A

Protein crystallography data

The structure of The Structure of Artemis Variant D37A, PDB code: 7afs was solved by Y.Yosaatmadja, S.Goubin, J.A.Newman, S.M.M.Mukhopadhyay, A.A.Dannerfjord, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.66 / 1.70
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 35.909, 48.062, 48.207, 82.89, 76.43, 86.38
R / Rfree (%) 18.6 / 21.6

Other elements in 7afs:

The structure of The Structure of Artemis Variant D37A also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the The Structure of Artemis Variant D37A (pdb code 7afs). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the The Structure of Artemis Variant D37A, PDB code: 7afs:

Nickel binding site 1 out of 1 in 7afs

Go back to Nickel Binding Sites List in 7afs
Nickel binding site 1 out of 1 in the The Structure of Artemis Variant D37A


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Structure of Artemis Variant D37A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni401

b:20.0
occ:1.00
O A:HOH545 2.0 18.3 1.0
OD2 A:ASP136 2.1 19.6 1.0
O A:HOH606 2.2 21.6 1.0
NE2 A:HIS115 2.2 19.8 1.0
ND1 A:HIS35 2.2 22.1 1.0
NE2 A:HIS33 2.3 19.5 1.0
CE1 A:HIS115 3.1 20.1 1.0
CE1 A:HIS35 3.1 21.9 1.0
CD2 A:HIS33 3.1 18.5 1.0
CG A:ASP136 3.2 19.1 1.0
CD2 A:HIS115 3.2 19.8 1.0
CG A:HIS35 3.2 20.8 1.0
CE1 A:HIS33 3.3 19.0 1.0
CB A:HIS35 3.6 20.5 1.0
CB A:ASP136 3.6 19.0 1.0
CD2 A:HIS38 4.1 22.0 1.0
NE2 A:HIS38 4.1 25.0 1.0
ND1 A:HIS115 4.2 19.4 1.0
NE2 A:HIS35 4.2 21.5 1.0
O A:HOH651 4.2 36.8 1.0
CG A:HIS115 4.3 19.5 1.0
CG A:HIS33 4.3 17.8 1.0
CD2 A:HIS35 4.3 21.7 1.0
OD1 A:ASP136 4.3 19.5 1.0
ND1 A:HIS33 4.3 18.5 1.0
CE1 A:HIS319 4.9 20.2 1.0

Reference:

Y.Yosaatmadja, S.Goubin, J.A.Newman, S.M.M.Mukhopadhyay, A.A.Dannerfjord, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, O.Gileadi. The Structure of Artemis/SNM1C/DCLRE1C with 2 Zinc Ions To Be Published.
Page generated: Wed Dec 16 01:59:06 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy