Atomistry » Nickel » PDB 6z8o-7err » 7b1s
Atomistry »
  Nickel »
    PDB 6z8o-7err »
      7b1s »

Nickel in PDB 7b1s: Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum at 0.994-A Resolution

Enzymatic activity of Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum at 0.994-A Resolution

All present enzymatic activity of Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum at 0.994-A Resolution:
2.8.4.1;

Protein crystallography data

The structure of Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum at 0.994-A Resolution, PDB code: 7b1s was solved by T.Wagner, O.N.Lemaire, S.Engilberge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.76 / 0.99
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 83.736, 146.927, 113.128, 90, 106.98, 90
R / Rfree (%) 11.2 / 12.8

Other elements in 7b1s:

The structure of Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum at 0.994-A Resolution also contains other interesting chemical elements:

Potassium (K) 4 atoms
Chlorine (Cl) 6 atoms
Manganese (Mn) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum at 0.994-A Resolution (pdb code 7b1s). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum at 0.994-A Resolution, PDB code: 7b1s:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 7b1s

Go back to Nickel Binding Sites List in 7b1s
Nickel binding site 1 out of 2 in the Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum at 0.994-A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum at 0.994-A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ni301

b:5.4
occ:1.00
NI C:USN301 0.0 5.4 1.0
ND C:USN301 2.1 5.0 1.0
NC C:USN301 2.1 5.5 1.0
NB C:USN301 2.1 4.8 1.0
NA C:USN301 2.1 4.8 1.0
S1 C:COM302 2.4 6.9 1.0
C4B C:USN301 3.0 5.6 1.0
C1C C:USN301 3.0 5.5 1.0
C1A C:USN301 3.0 5.0 1.0
C1D C:USN301 3.1 5.5 1.0
C4D C:USN301 3.1 5.4 1.0
C4C C:USN301 3.1 5.2 1.0
SD D:MET181 3.2 6.8 1.0
C1B C:USN301 3.2 5.0 1.0
C1 C:COM302 3.2 7.2 1.0
CHA C:USN301 3.3 5.5 1.0
C4A C:USN301 3.3 5.3 1.0
CHC C:USN301 3.3 5.6 1.0
CHB C:USN301 3.5 5.5 1.0
CHD C:USN301 3.5 5.6 1.0
N5B C:USN301 3.9 5.2 1.0
CE D:MET181 3.9 7.1 1.0
OH B:TYR391 4.1 6.7 1.0
C2 C:COM302 4.1 6.3 1.0
C3B C:USN301 4.3 5.6 1.0
OH A:TYR376 4.3 7.8 1.0
C3D C:USN301 4.3 5.6 1.0
C2C C:USN301 4.4 5.8 1.0
C2D C:USN301 4.4 5.7 1.0
C2A C:USN301 4.4 5.4 1.0
C3A C:USN301 4.4 5.5 1.0
C3C C:USN301 4.4 5.3 1.0
C2B C:USN301 4.5 5.5 1.0
CG D:MET181 4.8 6.5 1.0
CE2 A:TYR376 4.9 7.1 1.0
CAA C:USN301 4.9 6.6 1.0
CAB C:USN301 4.9 6.4 1.0
C7D C:USN301 5.0 6.0 1.0
C2 C:USN301 5.0 6.0 1.0

Nickel binding site 2 out of 2 in 7b1s

Go back to Nickel Binding Sites List in 7b1s
Nickel binding site 2 out of 2 in the Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum at 0.994-A Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of the Ethyl-Coenzyme M Reductase From Candidatus Ethanoperedens Thermophilum at 0.994-A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ni1101

b:4.1
occ:1.00
NI D:USN1101 0.0 4.1 1.0
NC D:USN1101 2.1 4.4 1.0
ND D:USN1101 2.1 4.2 1.0
NB D:USN1101 2.1 4.0 1.0
NA D:USN1101 2.1 3.6 1.0
S1 F:COM401 2.5 6.0 1.0
C4B D:USN1101 3.0 3.6 1.0
C1C D:USN1101 3.0 3.9 1.0
C1A D:USN1101 3.0 3.7 1.0
C1D D:USN1101 3.1 4.2 1.0
C4D D:USN1101 3.1 4.3 1.0
C4C D:USN1101 3.1 4.1 1.0
SD A:MET181 3.2 5.5 1.0
C1 F:COM401 3.2 6.0 1.0
C1B D:USN1101 3.3 4.0 1.0
C4A D:USN1101 3.3 4.0 1.0
CHA D:USN1101 3.3 4.3 1.0
CHC D:USN1101 3.3 3.8 1.0
CHB D:USN1101 3.5 4.0 1.0
CHD D:USN1101 3.5 4.1 1.0
N5B D:USN1101 3.9 4.3 1.0
CE A:MET181 3.9 5.5 1.0
OH E:TYR391 4.0 5.7 1.0
C2 F:COM401 4.1 5.6 1.0
C3B D:USN1101 4.3 4.2 1.0
OH D:TYR376 4.3 6.6 1.0
C2C D:USN1101 4.3 4.4 1.0
C3D D:USN1101 4.4 4.1 1.0
C2A D:USN1101 4.4 3.9 1.0
C2D D:USN1101 4.4 3.9 1.0
C3A D:USN1101 4.4 3.8 1.0
C3C D:USN1101 4.4 4.2 1.0
C2B D:USN1101 4.5 4.2 1.0
CG A:MET181 4.8 5.2 1.0
CE2 D:TYR376 4.9 5.2 1.0
CAA D:USN1101 4.9 4.5 1.0
CAB D:USN1101 4.9 4.9 1.0
C7D D:USN1101 5.0 4.4 1.0
C2 D:USN1101 5.0 4.9 1.0

Reference:

C.J.Hahn, O.N.Lemaire, J.Kahnt, S.Engilberge, G.Wegener, T.Wagner. Crystal Structure of A Key Enzyme For Anaerobic Ethane Activation. Science V. 373 118 2021.
ISSN: ESSN 1095-9203
PubMed: 34210888
DOI: 10.1126/SCIENCE.ABG1765
Page generated: Sat Aug 21 17:30:59 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy